User: louis-gil

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Posts by louis-gil

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Comment: C: Any alternatives to Cellranger aligner that Seurat can read?
... The output of cellranger is compressed in 3 files (barcodes, features, matrix) which contain a compression of the count matrix and HTO info. Seurat, decompressed into a count matrix. I'm basically asking if there are any programs that use the same output as cellranger. ...
written 4 weeks ago by louis-gil0
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Any alternatives to Cellranger aligner that Seurat can read?
... Are there good alternatives to Cellranger aligner that Seurat can read? Or any methods of converting default output from Star to the Seurat readable format? ...
scrna-seq rna-seq cellranger sequencing written 4 weeks ago by louis-gil0 • updated 4 weeks ago by ATpoint42k
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Where to Download Cancer Raw Reads (fastq)?
... Does anyone know where I can download cancer raw reads (fastq files), tumor and Germline for non-humans? I wanted to make a study with human data but I don't have the control access to download raw reads. ...
sequence next-gen rna-seq written 21 months ago by louis-gil0 • updated 21 months ago by manuel.belmadani1.2k
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Comment: C: What is CINWntUp and CINnormL?
... Thanks, I forgot to add the link. ...
written 2.1 years ago by louis-gil0
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What is CINWntUp and CINnormL?
... What is CINWntUp and CINnormL? I read a paper that uses this two things as classes but Im not sure what they represent. I imply that CIN is referring to Chromosomal instability but I don't know what WntUp & normL refer to. (https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4214593/) ...
gene written 2.1 years ago by louis-gil0 • updated 8 months ago by Biostar ♦♦ 20

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Popular Question 5 months ago, created a question with more than 1,000 views. For Where to Download Cancer Raw Reads (fastq)?

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