User: anjuraas

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anjuraas10
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9 months, 2 weeks ago
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1 year, 10 months ago
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Posts by anjuraas

<prev • 42 results • page 1 of 5 • next >
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Comment: C: Deseq2 error,RNA-seq, usegalaxy
... Thank you all for your kind replies. I found the mistake in my input file. the deseq tool read my gene name in the count table, which in some cases ended in hash 2 as -2. When I gave another feature type in featurecounts the problem was solved. ...
written 9 months ago by anjuraas10
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Comment: C: Deseq2 error,RNA-seq, usegalaxy
... i checked the whole count files. but can't see any negative values. all the values are 0 and >0. ...
written 9 months ago by anjuraas10
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Comment: C: Deseq2 error,RNA-seq, usegalaxy
... i didnt change any of the settings. For i DE when i changed turn off outliers to yes the error was solved. but not to other files ...
written 9 months ago by anjuraas10
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Comment: C: Deseq2 error,RNA-seq, usegalaxy
... after aligning with bowtie i took count table from featurecounts. ...
written 9 months ago by anjuraas10
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Deseq2 error,RNA-seq, usegalaxy
... hi all i am working in RNA-seq dataset in gastric cancer. i am doing differential expression using DeSeq2 in usegalaxy. While doing i am getting this error ![DeSeq2][1] [1]: https://img.techpowerup.org/191203/deseq2.png how can i solve this issue? Please help. ...
deseq2 rna-seq written 9 months ago by anjuraas10 • updated 9 months ago by skjobs012370
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Comment: C: error in deseq2
... I ran these same dataset before. that time I got the results. only difference is, now I am using latest version of gff file from ncbi. ...
written 13 months ago by anjuraas10
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Comment: C: error in deseq2
... ![this is my feature count table which I used as input for deseq2. I am not able to find the mistake in this.][1] https://ibb.co/mvk0jCP` ` ...
written 13 months ago by anjuraas10
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Comment: C: error in deseq2
... I cant fine anything wrong in featureCount input file. If I give header it is showing duplicate row names are allowed and if I supress the header it is showing the above said error. ...
written 13 months ago by anjuraas10
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Comment: C: error in deseq2
... I took my dataset from SRA and used bowtie for illumina for alignment and used featureCount for count table. I downloaded gff file and fna file from ncbi. ...
written 13 months ago by anjuraas10
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Comment: C: error in deseq2
... I put supress the header option true. ...
written 13 months ago by anjuraas10

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