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4
votes
12
replies
6.2k
views
Extract fasta sequence from gff3 file
sequence
updated 4 months ago by ▴ 10 • written 3.1 years ago by ▴ 10
1
vote
2
replies
512
views
Combine files that have partial filename matches
Sequence
updated 15 months ago by 161k • written 15 months ago by ▴ 10
1
vote
3
replies
580
views
Split file into multiple individual files based on specific attributes
Sequence
15 months ago by genomes_and_MGEs ▴ 10
1
vote
3
replies
647
views
Parsing genbank or gff files based on specific nucleotide coordinates
Sequence
updated 17 months ago by 21k • written 17 months ago by ▴ 10
3
votes
1
reply
386
views
Separate letters in the same column into different rows
sequence
updated 21 months ago by 161k • written 21 months ago by ▴ 10
3
votes
3
replies
967
views
Extract first and last column of fasta-header
sequence
updated 22 months ago by ▴ 380 • written 22 months ago by ▴ 10
3
votes
3
replies
739
views
Count values based on condition
sequence
updated 23 months ago by 14k • written 23 months ago by ▴ 10
2
votes
2
replies
453
views
Add new column with filename
sequence
updated 23 months ago by 21k • written 23 months ago by ▴ 10
1
vote
2
replies
521
views
Rename filenames based on list
sequence
updated 24 months ago by 4.5k • written 24 months ago by ▴ 10
0
votes
3
replies
728
views
Append assembly accession to nucleotide accession number in RefSeq Genbank file
sequence
updated 2.0 years ago by 21k • written 2.0 years ago by ▴ 10
0
votes
1
reply
428
views
Filter numeric matrix only show large network clusters in Cytoscape
sequence
2.1 years ago by genomes_and_MGEs ▴ 10
3
votes
3
replies
523
views
Sequence length of fasta sequences with special characters removed
sequence
updated 2.1 years ago by 21k • written 2.1 years ago by ▴ 10
3
votes
3
replies
1.4k
views
Count number of basepairs and exclude other characters
sequence
updated 2.5 years ago by 87k • written 2.5 years ago by ▴ 10
1
vote
1
reply
662
views
Split multi-fasta file and keep structure
sequence
updated 2.6 years ago by 21k • written 2.6 years ago by ▴ 10
1
vote
3
replies
1.5k
views
Remove whitespaces on fasta files, except on fasta-header
sequence
updated 2.7 years ago by 21k • written 2.7 years ago by ▴ 10
1
vote
10
replies
1.7k
views
Extract NCBI's refseq assembly accession number from nuccore IDs
sequence
updated 2.9 years ago by 43k • written 2.9 years ago by ▴ 10
1
vote
2
replies
629
views
Filter rows below a given threshold
sequence
updated 3.4 years ago by 35k • written 3.4 years ago by ▴ 10
12
votes
6
replies
1.3k
views
6 follow
Converting to decimal values
sequence
updated 3.4 years ago by 35k • written 3.4 years ago by ▴ 10
1
vote
1
reply
468
views
Convert coverage values to number of occurrence
sequence gene
updated 3.4 years ago by 161k • written 3.4 years ago by ▴ 10
2
votes
2
replies
757
views
Only copy multifasta files from one directory to another
sequence assembly
updated 3.5 years ago by 21k • written 3.5 years ago by ▴ 10
5
votes
2
replies
1.4k
views
Removing text after last underscore on given column
sequence
updated 3.6 years ago by 13k • written 3.6 years ago by ▴ 10
1
vote
2
replies
697
views
Extracting genomic regions based on coordinates in a text file
sequence
updated 3.6 years ago by 161k • written 3.6 years ago by ▴ 10
1
vote
3
replies
888
views
Append fasta header to corresponding fasta filename
sequence
updated 3.7 years ago by 21k • written 3.7 years ago by ▴ 10
2
votes
8
replies
2.0k
views
7 follow
Batch rename protein fasta headers
sequence
updated 4.1 years ago by 21k • written 4.1 years ago by ▴ 10
0
votes
6
replies
1.3k
views
Extract protein files from nucleotide accession numbers
sequence
updated 4.1 years ago by ★ 3.7k • written 4.1 years ago by ▴ 10
4
votes
2
replies
2.7k
views
Extract fasta sequnces not matching a list
Assembly sequence
updated 4.2 years ago by 141k • written 4.2 years ago by ▴ 10
0
votes
1
reply
568
views
List names in column that match a given word in another column
sequence genome
updated 4.7 years ago by 141k • written 4.7 years ago by ▴ 10
14
votes
9
replies
7.3k
views
Kill nohup bash process
genome sequence
updated 4.9 years ago by 5.7k • written 4.9 years ago by ▴ 10
4
votes
2
replies
969
views
Download genomes within a given GC content interval
Assembly genome sequence
updated 4.9 years ago by 141k • written 4.9 years ago by ▴ 10
5
votes
5
replies
1.3k
views
Remove text flanking .. on fasta-headers
genome sequence
updated 5.1 years ago by 21k • written 5.1 years ago by ▴ 10
1
vote
19
replies
4.9k
views
Outputting strain name on prokka annotation
genome sequence
5.1 years ago by genomes_and_MGEs ▴ 10
5
votes
4
replies
805
views
Query bacterial genus on NCBI from a list of accessions
genome
updated 5.1 years ago by 141k • written 5.1 years ago by ▴ 10
1
vote
4
replies
1.1k
views
Blasting against all assemblies on NCBI without downloading the genomes
Assembly genome
5.1 years ago by genomes_and_MGEs ▴ 10
3
votes
3
replies
1.2k
views
Extract fasta-headers that have the same word
Assembly sequencing
updated 5.1 years ago by 141k • written 5.1 years ago by ▴ 10
3
votes
4
replies
2.2k
views
Rename several fasta-headers
genome assembly
updated 5.1 years ago by 161k • written 5.1 years ago by ▴ 10
2
votes
2
replies
776
views
Retrieving assembly statistics for several accessions
Assembly sequence genome
5.2 years ago by genomes_and_MGEs ▴ 10
1
vote
1
reply
791
views
Extracting the assemblies from wgs accessions
Assembly sequence genome
updated 5.2 years ago by ★ 3.7k • written 5.2 years ago by ▴ 10
1
vote
1
reply
718
views
Extracting strain name from several assemblies
assembly genome
updated 5.2 years ago by 141k • written 5.2 years ago by ▴ 10
2
votes
10
replies
2.6k
views
Batch rename RefSeq assembly for the corresponding organism name
Assembly genome
5.2 years ago by genomes_and_MGEs ▴ 10
39 results • Page 1 of 1
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