User: nk778

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nk7780
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Posts by nk778

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Python script for generating Genomic windows of intervals 50kbp for Human refere
... Thank you once again! Your suggestions really helped! ...
written 4 weeks ago by nk7780
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Comment: C: Python script for generating Genomic windows of intervals 50kbp for Human refere
... Thank you so much for your help. Realy appreciate it. I will give it a try. Thanks once again ...
written 5 weeks ago by nk7780
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Comment: A: Python script for generating Genomic windows of intervals 50kbp for Human refere
... Thank you all for your expert insights! Bedtools and bedops are a better option than just writing my own python script. My purpose of generating these windows is to find the CNV frequency in each genomic intervals for 200,000 CNV coordinates in my dataset. Bedtools intersect function and -c flag see ...
written 5 weeks ago by nk7780
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Comment: A: Python script for generating Genomic windows of intervals 50kbp for Human refere
... Thank you for your suggestions! I will check out bedtools for making the genomic windows. Thank you once again ...
written 5 weeks ago by nk7780
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Python script for generating Genomic windows of intervals 50kbp for Human reference genome Hg19
... Hello all, Where can I download all the chromosomal coordinates for the entire hg19 reference genome? Additionally, can anyone help me generate a python script that will split the whole genome into 50kbp windows? My draft python code is given below step = 50000 with open('Chr.bed', 'w') as outfp: ...
genome assembly written 5 weeks ago by nk7780

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