User: ati_

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Posts by ati_

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Answer: A: correct list of capture targets/intervals for SureSelect mouse exome to perform
... for those who read this thread because they faced similar problem: 1. The target of SureSelect XT mouse exome is based on UCSC mm9 mouse genome build and a BED file with exon and gene annotation is available on the Agilent eArray website. 2. log into eArray and find the bed file (regions_mm9.bed ) u ...
written 5 days ago by ati_0
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correct list of capture targets/intervals for SureSelect mouse exome to perform GATK Mutect2
... Hi , I am doing somatic variant calling using GATK Mutect2 in a mouse model of melanoma based on mm10 reference. according to [standard workflow][1] to generate a panel of normals I need the [list of target intervals][2] for the "mouse exome" data which has been generated using [SureSelect XT][3] . ...
pon mouse exom list of intervals mutect2 written 9 days ago by ati_0
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Comment: A: Processing WES mouse data using GATK on Terra Bio
... Hi , I am also doing somatic variant calling using GATK Mutect2 in a mouse model of melanoma based on mm10 reference. according to [standard workflow][1] to generate a panel of normals I need the [list of target intervals][2] for the "mouse exome" data which has been generated using "SureSelect XT" ...
written 9 days ago by ati_0

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