User: vncnt.anna

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vncnt.anna0
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Posts by vncnt.anna

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Problem with vcf-merge
... Hi I am trying to merge two VCFs which I got from using platypus joint variant calling on bam files which I had to split from the original files I got, they were just to big for the cluster I'm using and had to split them per chromosome for variant calling. I did zip my vcfs using bgzip and then i ...
next-gen snp written 8 months ago by vncnt.anna0 • updated 8 months ago by ATpoint19k
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Joint variant calling with platypus killed for exceeding memory.
... Hi, I am running into some problems with variant calling for one of my projects. I need to call variants for 601 individuals for which I have exome capture data for chromosome X, Y, MT, and some other autosomal genes. I used bwa-mem to map them to the grch38 reference which worked fine, even tho ...
software error next-gen snp written 8 months ago by vncnt.anna0 • updated 6 months ago by RamRS23k

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