User: mariamcurbelo2061

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Posts by mariamcurbelo2061

<prev • 7 results • page 1 of 1 • next >
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Answer: A: Calculate Average Dn And Ds For Gene Families
... Using PALM on python worked for me. It generates a dictionary, and you can access to all the variables, including of course dn and ds separately ...
written 8 days ago by mariamcurbelo20610
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Comment: C: Error in module A of TCGA assembler
... And this is what I get on the console > source("Module_A.R") > source("Module_B.R") > sPath1 <- "./QuickStartExample/Part1_DownloadedData" > sPath2 <- "./QuickStartExample/Part2_BasicDataProcessingResult" > sPath3 <- "./QuickStartExample/Part3_Advance ...
written 14 days ago by mariamcurbelo20610
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Comment: C: Error in module A of TCGA assembler
... source("Module_A.R") source("Module_B.R") sPath1 <- "./QuickStartExample/Part1_DownloadedData" sPath2 <- "./QuickStartExample/Part2_BasicDataProcessingResult" sPath3 <- "./QuickStartExample/Part3_AdvancedDataProcessingResult" sCancer <- "BRCA" vPatientID <- ...
written 14 days ago by mariamcurbelo20610
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Comment: C: Error in module A of TCGA assembler
... I just copied the first lines provided from the quickexample provided from TCGS-assembler folder ...
written 14 days ago by mariamcurbelo20610
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Performing a dn/ds analysis on cancer genes
... Hello, I´m a newbie in bioinformatics. I want to preform a dn/ds analysis on cancer genes. For an specif gene, let's say BRCA1 should I use only the information on the MAF file or should I analyse all the patients variants?. PD Papers such as:[paper 1][1] [paper 2][2] perform a dn/ds analysis on c ...
dn/ds tcga sequences snp cancer written 14 days ago by mariamcurbelo20610
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Comment: C: Error in module A of TCGA assembler
... Hello.I'm a newbie too. I have the exact same problem, did you managed to figure it out? Because no one answered the post... Thanks in advance ...
written 14 days ago by mariamcurbelo20610
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dn/ds ka/ks in cancer genes
... Hello, I need to know if to calculate dn/ds on an specific cancer gene, I need the germline of the patient and the cancer somatic sequence as well? I´m still a student and in my univesity I´m the only one working with the method, so everything is new to me and any opinion will be of great help Thank ...

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