User: mdtoney

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mdtoney0
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Posts by mdtoney

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Comment: C: Choosing Random Set Of Seqs From Larger Set
... Yea, I'm sure there is some naive/unnecessary stuff in here, but I don't want to hear your pedantics. ...
written 26 days ago by mdtoney0
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Comment: C: Choosing Random Set Of Seqs From Larger Set
... New version of my script with loop to make sure there are no duplicates in the output file. ...
written 26 days ago by mdtoney0
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Answer: A: Choosing Random Set Of Seqs From Larger Set
... import sys,random from Bio import SeqIO from Bio.Seq import Seq from Bio.SeqRecord import SeqRecord from Bio.Alphabet import generic_protein # I use this from small numbers of sequences (input file up to 10000 sequences) and it works fine. # For very large sequence ...
written 26 days ago by mdtoney0
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Comment: C: Choosing Random Set Of Seqs From Larger Set
... I'm a part-time hack, so this can probably be done much better. ...
written 28 days ago by mdtoney0
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Comment: C: Choosing Random Set Of Seqs From Larger Set
... OK, finally figured out how to make it look right. ...
written 28 days ago by mdtoney0
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Answer: A: Choosing Random Set Of Seqs From Larger Set
... import sys,random from Bio import SeqIO from Bio.Seq import Seq from Bio.SeqRecord import SeqRecord from Bio.Alphabet import generic_protein # Use: python scriptname.py number_of_random_seq infile.fasta outfile.fasta infile = sys.argv[2] #Name of ...
written 28 days ago by mdtoney0
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Comment: C: Choosing Random Set Of Seqs From Larger Set
... Wow, that didn't show up correctly! ...
written 28 days ago by mdtoney0
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Answer: A: Choosing Random Set Of Seqs From Larger Set
... Here is some python I wrote that I have used with good success: import sys,random from Bio import SeqIO from Bio.Seq import Seq from Bio.SeqRecord import SeqRecord from Bio.Alphabet import generic_protein # Use: python scriptname.py number_of_random_seq infile.fasta outfile.fasta infile = ...
written 28 days ago by mdtoney0

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