User: mdtoney

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mdtoney0
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Posts by mdtoney

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Comment: C: Choosing Random Set Of Seqs From Larger Set
... Yea, I'm sure there is some naive/unnecessary stuff in here, but I don't want to hear your pedantics. ...
written 3 months ago by mdtoney0
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Comment: C: Choosing Random Set Of Seqs From Larger Set
... New version of my script with loop to make sure there are no duplicates in the output file. ...
written 3 months ago by mdtoney0
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Answer: A: Choosing Random Set Of Seqs From Larger Set
... import sys,random from Bio import SeqIO from Bio.Seq import Seq from Bio.SeqRecord import SeqRecord from Bio.Alphabet import generic_protein # I use this from small numbers of sequences (input file up to 10000 sequences) and it works fine. # For very large sequence ...
written 3 months ago by mdtoney0
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Comment: C: Choosing Random Set Of Seqs From Larger Set
... I'm a part-time hack, so this can probably be done much better. ...
written 3 months ago by mdtoney0
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Comment: C: Choosing Random Set Of Seqs From Larger Set
... OK, finally figured out how to make it look right. ...
written 3 months ago by mdtoney0
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Answer: A: Choosing Random Set Of Seqs From Larger Set
... import sys,random from Bio import SeqIO from Bio.Seq import Seq from Bio.SeqRecord import SeqRecord from Bio.Alphabet import generic_protein # Use: python scriptname.py number_of_random_seq infile.fasta outfile.fasta infile = sys.argv[2] #Name of ...
written 3 months ago by mdtoney0
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Comment: C: Choosing Random Set Of Seqs From Larger Set
... Wow, that didn't show up correctly! ...
written 3 months ago by mdtoney0
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Answer: A: Choosing Random Set Of Seqs From Larger Set
... Here is some python I wrote that I have used with good success: import sys,random from Bio import SeqIO from Bio.Seq import Seq from Bio.SeqRecord import SeqRecord from Bio.Alphabet import generic_protein # Use: python scriptname.py number_of_random_seq infile.fasta outfile.fasta infile = ...
written 3 months ago by mdtoney0

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