User: eozcan

gravatar for eozcan
eozcan10
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5 hours ago
Joined:
1 year, 10 months ago
Email:
e*****@foodsci.umass.edu

Posts by eozcan

<prev • 16 results • page 1 of 2 • next >
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Comment: A: Trinity.fasta file missing "does not exist in the out directory:
... did you find a solution for your problem, can you share? ...
written 5 days ago by eozcan10
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Comment: C: High no feature counts in ht-seq counts
... I tried another annotation file and a fasta file from Ensemle, the previous one from ncbi. In order to see if there is a problem with the annotation file. I got lower counts and higher no feature. ...
written 21 months ago by eozcan10
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Comment: C: High no feature counts in ht-seq counts
... I tried that it does not change/improve my reads. ...
written 21 months ago by eozcan10
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Comment: C: High no feature counts in ht-seq counts
... I am not sure if you can see the image. But it is aligning to the genes. ...
written 21 months ago by eozcan10
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Comment: C: High no feature counts in ht-seq counts
... ![enter image description here][1]does this mean they are aligning to genome? [igvsnapshot][2] [1]: http://tinypic.com/view.php?pic=mvs0b8&s=9#.XBKfahNKjfA [2]: http://tinypic.com/view.php?pic=mvs0b8&s=9#.XBKfahNKjfA ...
written 21 months ago by eozcan10 • updated 21 months ago by genomax89k
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Comment: A: High no feature counts in ht-seq counts
... [Update] my sorted bam files were name sorted and ht-seq count somehow do not like that kind of sort in my samples. So, I redo htseq count with coordinate sorted bam files, however, that did not improve the no-feature counts. I had some addition to my command line as below -o eo8_sortedcoordin ...
written 21 months ago by eozcan10 • updated 21 months ago by WouterDeCoster44k
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Comment: C: High no feature counts in ht-seq counts
... I dowloaded them both from ncbi from same genome. ...
written 21 months ago by eozcan10
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Comment: C: High no feature counts in ht-seq counts
... stranded option is reverse, I specified it. It is there. What else is incomplete I didnt understand? ...
written 21 months ago by eozcan10
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Comment: C: High no feature counts in ht-seq counts
... I made the libraries and it is stranded. ...
written 21 months ago by eozcan10
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Comment: C: High no feature counts in ht-seq counts
... I have not. Which genome browser would you recommend? and what should I check when I review it? ...
written 21 months ago by eozcan10

Latest awards to eozcan

Popular Question 8 months ago, created a question with more than 1,000 views. For EzBioCloud for contamination of Illumina raw files
Popular Question 19 months ago, created a question with more than 1,000 views. For has anyone use trimmomatic with NEBNext adaptors

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