Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In

User: eozcan

gravatar for eozcan
eozcan • 10
Reputation:
10
Status:
New User
Location:
Last seen:
2 months, 3 weeks ago
Joined:
2 years, 2 months ago
Email:
e*****@foodsci.umass.edu

Posts by eozcan

<prev • 16 results • page 2 of 2 • next >
1
vote
0
answers
796
views
5 follow
0
answers
High no feature counts in ht-seq counts
... Hi, I know this question has been posted before but I could not find answers to increase my counts for RNA-seq reads. I have done RNA-seq in Illumina Nextseq. I prepared libraries with NEBNext Ultra II Directional library kit. I used bowtie2 to map my reads to the reference genome. It is a bacteri ...
rna-seq sequencing written 2.1 years ago by eozcan • 10
0
votes
0
answers
1.9k
views
0
answers
Comment: C: EzBioCloud for contamination of Illumina raw files
... >NS500540:135:HFF77AFXY:1:11101:6499:1061 1:N:0:ATTACTCG+NGGATAGG GGCATTACTTCGGGGTAGGTCTTAAATAAGAGCGCAATGTTGGTATAGGCTCCCGTTGGCACTAACGTAATCGGT >NS500540:135:HFF77AFXY:1:11101:23445:1062 1:N:0:ATTACTCG+NGGATAGG CGCGTTTAAAACTTGGGAATGTCTTCGTAACAGACATGCACCTCCGTTTAAACTTTGTAATACCTGAGT ...
written 2.1 years ago by eozcan • 10 • updated 2.1 years ago by WouterDeCoster ♦ 45k
0
votes
0
answers
1.9k
views
0
answers
Comment: C: EzBioCloud for contamination of Illumina raw files
... I tried to upload a fasta concatenated file from my Illumina pair-end reads, it says "something went wrong displaying the webpage." ...
written 2.1 years ago by eozcan • 10
0
votes
0
answers
1.9k
views
0
answers
Comment: C: EzBioCloud for contamination of Illumina raw files
... here is the link. I tried fastq format, it reject that format from the beginning. https://www.ezbiocloud.net/tools/contest16s ...
written 2.1 years ago by eozcan • 10
0
votes
0
answers
1.9k
views
0
answers
EzBioCloud for contamination of Illumina raw files
... Hi, Anybody used ContEst16S: an algorithm that identifies contaminated prokaryotic genomes using 16S RNA gene sequences from EZBiocloud for Illumina files? It gives error when I upload fasta file reads from Illumina. I unzip files and convert them to fasta. It says something went wrong in a webpag ...
rna-seq sequencing written 2.1 years ago by eozcan • 10 • updated 2.1 years ago by GenoMax ♦ 94k
7
votes
1
answer
2.4k
views
1
answer
has anyone use trimmomatic with NEBNext adaptors
... Hello, I am trying to remove adapters from my RNA-seq files obtained from Illumina. I used NEBNext ultra directional kit for illumina for library prep and NEBNext® Multiplex Oligos for Illumina® (Dual Index Primers Set 1) for adaptors and primers. I want to use trimmomatic, it has adapter files fo ...
rna-seq written 2.2 years ago by eozcan • 10 • updated 11 months ago by alexgoro13 • 0

Latest awards to eozcan

Popular Question 12 months ago, created a question with more than 1,000 views. For EzBioCloud for contamination of Illumina raw files
Popular Question 23 months ago, created a question with more than 1,000 views. For has anyone use trimmomatic with NEBNext adaptors
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2617 users visited in the last hour
_