User: emilyc

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emilyc10
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10 months, 1 week ago
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Posts by emilyc

<prev • 24 results • page 1 of 3 • next >
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Comment: C: Unable to run 'pdflatex'
... Yup! I've got a LaTeX distribution installed. I could find a solution to doing this another way, but I am most interested in understanding why it won't work. After testing examples it seems that it will work on package example, but not my sequence alignment. Not certain why. ...
written 13 days ago by emilyc10
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Unable to run 'pdflatex'
... Hi everyone, I am using Rstudio for this at the moment. It appears that pdflatex won't function with msaPrettyPrint picorna = readDNAStringSet("/home/emily/pipe/RNA_merge/SPAdes/RNA_merge_picorna_of_interest.fasta") picorna_seq = paste(picorna) picorna_name = names(picorna) pico ...
R latex written 13 days ago by emilyc10
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Comment: C: Why won't this list of strings store as a variable in R?
... yes, I tried in the terminal directly. The same issue occurs. I can shorten it and get it to work also, but I was hoping to avoid having to do this. Thanks for the help! ...
written 8 weeks ago by emilyc10
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Comment: C: Why won't this list of strings store as a variable in R?
... Ah it's by characters - that makes more sense. Awesome, thank you! ...
written 8 weeks ago by emilyc10
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Comment: C: Why won't this list of strings store as a variable in R?
... Do you have any idea of the actual limit? Based on this I can manipulate it outside of R. Thanks either way. ...
written 8 weeks ago by emilyc10
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Comment: C: Why won't this list of strings store as a variable in R?
... Yes, it's a separate file completely manipulated in unix, none of it is manual. I've copied and pasted it into R just because I am sending this complete script to someone who doesn't understand how to use R. It's exactly the same in the file that I read in. ...
written 8 weeks ago by emilyc10
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Why won't this list of strings store as a variable in R?
... Hello/bonjour, I really cannot figure out the reason I am getting an error with the below when executed in R. RNA1 <- c("ARE85692.1", "WP_030538461.1", "OLA28585.1", "WP_030092979.1", "WP_011255103.1", "WP_037470143.1", "WP_037470142.1","WP_048575187.1", "WP_040265129.1", "WP_112366619.1", ...
R strings written 8 weeks ago by emilyc10
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Answer: A: Best command line ORF finder
... [GeneMark][1] (many options for different needs). [1]: http://topaz.gatech.edu/GeneMark/license_download.cgi ...
written 9 weeks ago by emilyc10
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Comment: C: InterProScan java issue
... Thank you. I am getting the following now. OpenJDK 64-Bit Server VM warning: Option AggressiveOpts was deprecated in version 11.0 and will likely be removed in a future release. Unrecognized VM option 'UseFastAccessorMethods' Error: Could not create the Java Virtual Machine. Error: ...
written 9 weeks ago by emilyc10
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InterProScan java issue
... Bonjour, How do I get my InterProScan to function when the version of java is incorrect. Java version 1.8 is required to run InterProScan. Detected version 11.0 Please install the correct version. Merci pour votre temps/thanks for your time Emily ...
interproscan java written 9 weeks ago by emilyc10 • updated 9 weeks ago by Pierre Lindenbaum123k

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