User: yaghoub.amraei
yaghoub.amraei • 10
- Reputation:
- 10
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- Last seen:
- 3 months ago
- Joined:
- 9 months ago
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Posts by yaghoub.amraei
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... hi all
i have 21 sample from RNA-seq single end. i want trim that with trimmomatic. whether i can use command for.
for f in *.fastq; do java -jar ~/sratoolkit.2.9.6-ubuntu64/apps/Trimmomatic-0.39/trimmomatic-0.39.jar SE -baseout ${f/.fastq} HEADCROP:30 LEADING:30 TRAILING:30 MINLEN:36; done ...
written 3 months ago by
yaghoub.amraei • 10
• updated
3 months ago by
kristoffer.vittingseerup • 2.2k
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Comment:
C: htseq-count no result give me
... [enter link description here][1]
[1]: http://yaghoub.com/gtffile ...
written 3 months ago by
yaghoub.amraei • 10
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192
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Comment:
C: htseq-count no result give me
...
No results meaning blank file ...
written 3 months ago by
yaghoub.amraei • 10
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... hi all
i have work with htseq-count. but no give output for me.
yghb@yghb-virtual-machine:~/amraei/count$ htseq-count -f bam ~/amraei/bam-file/A1.bam ~/amraei/gene/Zea_mays.B73_RefGen_v4.42.gtf > A1-count.txt
...
written 3 months ago by
yaghoub.amraei • 10
• updated
3 months ago by
RamRS ♦ 23k
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... hi all.
Whether there is a database or software for the Intron targeted amplified polymorphism (ITAP).
thanks a lot ...
written 3 months ago by
yaghoub.amraei • 10
• updated
11 weeks ago by
Biostar ♦♦ 20
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... thanks .. how can i perform from R or Excel... ...
written 5 months ago by
yaghoub.amraei • 10
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298
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... Hi all,
how can i merge trinscript id from results de novo assembly with trinity . i have givie correlation between Transcript and LncRNA and result too much. so i have remove same isoforms with R.
thanks alot
Var1 Var2 Freq
TRINITY_DN17567_c0 ...
written 5 months ago by
yaghoub.amraei • 10
• updated
5 months ago by
h.mon ♦ 26k
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... Now, how can I get the modules according to correlation? ...
written 5 months ago by
yaghoub.amraei • 10
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... Hi all
how can perform co-expression analysis with 4 samples in R Or a package with this number of sample give me p.value..
thanks ...
written 5 months ago by
yaghoub.amraei • 10
4
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321
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... Hi.all
l have four samples from four experiments. 5021 genes that are folding change more than 2 and 2317 long coding RNA. How can I make a co-expression with this data?
thanks a lot ...
written 5 months ago by
yaghoub.amraei • 10
• updated
5 months ago by
peter.langfelder • 20
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