User: zuhaibzulfiqarahmed

Reputation:
0
Status:
New User
Last seen:
1 month ago
Joined:
8 months ago
Email:
z******************@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by zuhaibzulfiqarahmed

<prev • 7 results • page 1 of 1 • next >
1
vote
0
answers
152
views
0
answers
Is it possible to transfer a local instance of Galaxy (from my computer) to Cloudman Galaxy
... Hello, I got a local instance of galaxy on my computer, and wanted to run a differential expression analysis for some samples of human RNA-seq data. I've managed to download the fastq reads for the samples and I've downloaded and indexed the human genome using HISAT2 index builder. But when I tried ...
galaxy cloud rna-seq written 7 weeks ago by zuhaibzulfiqarahmed0
0
votes
0
answers
241
views
0
answers
Comment: C: Relation between GO terms of homologous genes in different organisms.
... Thank You! The way I was thinking of doing it is to pool all the GO terms from all results, and take the top 3 or 4, as a representative annotation for the gene. For example, for the mgsA gene has results in cows, humans, myobacterium, sacchromyces, etc. So take all the GO annotations from all those ...
written 5 months ago by zuhaibzulfiqarahmed0
0
votes
0
answers
241
views
0
answers
Comment: C: Relation between GO terms of homologous genes in different organisms.
... @Jean-Karim Heriche Thanks for the reply. So for example, the mgsA gene in E coli would have similar annotations as the mgsA gene in humans? ...
written 6 months ago by zuhaibzulfiqarahmed0
0
votes
0
answers
241
views
0
answers
Relation between GO terms of homologous genes in different organisms.
... Hello, I'm writing a small program that takes in a list of Uniprot gene names (and organisms of interest), and returns a visual representation of the GO terms associated with that list of genes in the specified organisms. I've run into an issue though. What if Uniprot doesn't have the GO terms for ...
annotation functional-annotation go written 6 months ago by zuhaibzulfiqarahmed0
0
votes
1
answer
328
views
1
answer
Is Prokka giving me an inaccurate number of genes?
... Hello, So I'm using Prokka to annotate the Borrelia Burgdorferi reference genome (ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/008/685/GCF_000008685.2_ASM868v2) So once I ran prokka on the .fna file, I used the following command to get the list of genes #Gets the list of genes, and puts th ...
software error annotation prokka gene assembly written 7 months ago by zuhaibzulfiqarahmed0 • updated 7 months ago by h.mon26k
0
votes
0
answers
288
views
0
answers
Comment: C: How to Determine Which Bacterial Assembly to Use from NCBI database?
... Thank You. But is it safe to assume that the newest assembly is the most accurate one? I'd actually like to explore what sort of genes are on the plasmid, but some assemblies only show one chromosome. So should I go for another assembly? ...
written 7 months ago by zuhaibzulfiqarahmed0
0
votes
0
answers
288
views
0
answers
How to Determine Which Bacterial Assembly to Use from NCBI database?
... Hello, I'm working on a final project for my genomics course. I'd like to analyze the genomes for a few species of Borrelia. However, the assemblies of the genomes seem to be very inconsistent. For example, for Borrelia afzelii, one assembly has 6 chromosomes and plasmids, and another has 10. Anoth ...
ncbi assembly written 8 months ago by zuhaibzulfiqarahmed0

Latest awards to zuhaibzulfiqarahmed

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2013 users visited in the last hour