User: gilbo

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gilbo20
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1 year, 6 months ago
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Posts by gilbo

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Answer: A: kallisto + sleuth: no results
... If anyone comes across this, when I encountered this error I realized I had forgotten to request enough memory from the cluster. I suspect that is also why when someone drops the number of cores it will fix the issue as well. ...
written 17 months ago by gilbo20
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Answer: A: sra toolkit prefetch: path not found while resolving tree within virtual file sy
... The long answer is that I had been attempting to download restricted information which is why vdb-config needed configured. Ultimately I found that prefetch wasn't working with even the example request. As it turns out, the IP address I was working with at been blacklisted for reasons not related ...
written 17 months ago by gilbo20
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sra toolkit prefetch: path not found while resolving tree within virtual file system module
... Hi all, Was wondering if anyone can enlighten me as to below. I've been troubleshooting this for several hours but can't figure it out. There seems to be an error where prefetch can't find the accession on ncbi. For example, the following line trying to fetch the example "SRR390728" given in sra ...
prefetch sra toolkit rna-seq written 18 months ago by gilbo20 • updated 15 months ago by Mike Vermeulen0

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Scholar 17 months ago, created an answer that has been accepted. For A: sra toolkit prefetch: path not found while resolving tree within virtual file sy

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