User: shahram.mesdaghi

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Posts by shahram.mesdaghi

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Answer: A: Why is there a difference in results when using HHpred server and HHsearch stand
... Thanks for that! I managed to obtain the same database that the server is using and still I get different results. Both my server and local run uses HHblits to generate the a3m files. I have realised, however, that I am using HHsuite 2.16 (apt get version) and the server is using 3.0. I'm goin ...
written 21 months ago by shahram.mesdaghi0
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Comment: A: I need an explanation about Rosetta de novo structure prediction and fragments p
... Hi I have the same problems as you had. So how did you 'generate a fragment library from all available structures'? Thank you! ...
written 21 months ago by shahram.mesdaghi0
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Why is there a difference in results when using HHpred server and HHsearch standalone
... When I use the server HHpred and search against PDB70 I get different results when I run it locally (run HHblits, add ss then HHsearch). I use the same setting as the server (I copy these from the raw output tab on the results from the server). I do, however, get the same results when I search again ...
hhpred hhsearch written 23 months ago by shahram.mesdaghi0

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