User: vijinim

gravatar for vijinim
vijinim50
Reputation:
50
Status:
Trusted
Location:
Last seen:
3 hours ago
Joined:
1 month, 3 weeks ago
Email:
v*******************@gmail.com

Posts by vijinim

<prev • 8 results • page 1 of 1 • next >
0
votes
0
answers
77
views
0
answers
Where can I find publicly available metagenomics contig datsets?
... I'm searching for a publicly available **metagenomics *contig* dataset** which has information regarding which contig came from which species and the assembler used. If anyone knows, can you kindly point me to the reasources? Thank you very much! :) ...
#metagenomics #datasets #contigs written 1 day ago by vijinim50
0
votes
1
answer
129
views
1
answers
Comment: C: What is differential abundance analysis?
... Thank you very much for the explanation. ...
written 15 days ago by vijinim50
2
votes
1
answer
129
views
1
answer
What is differential abundance analysis?
... I'm new to the field of metagenomics and I have been reading research work done on binning in metagenomics. I have been reading this [paper][1] where the authors discuss about different metagenome binning approaches. The last approach is **Differential abundance (DA)**. They explain the starting p ...
metagenomics binning abundance written 29 days ago by vijinim50 • updated 29 days ago by Noam Teyssier40
0
votes
1
answer
150
views
1
answers
Comment: C: how can i use python to align dna sequences with t-coffee algorithm??
... You will have to write python scripts and call the subprocess module to run each . ...
written 5 weeks ago by vijinim50
1
vote
0
answers
235
views
0
answers
Comment: C: Binning of reads vs. binning of contigs in metagenomics
... Thank you very much for the explanations and clarifications. :) ...
written 7 weeks ago by vijinim50
1
vote
0
answers
235
views
0
answers
Comment: C: Binning of reads vs. binning of contigs in metagenomics
... How can we remove redundancy by binning reads? I thought that we bin reads so we can separate the reads belonging to different species and use the sequences in each bin to assemble genomes of those species separately. ...
written 7 weeks ago by vijinim50
1
vote
1
answer
150
views
1
answers
Answer: A: how can i use python to align dna sequences with t-coffee algorithm??
... Biopython provides a [command line wrapper for T-Coffee][1]. However it has a limited number of options. You can install T-Coffee from the [T-Coffee Project homepage][2] as Bastien mentioned and run it directly. However if you wish to run T-Coffee commands within a python program you have developed ...
written 8 weeks ago by vijinim50
6
votes
0
answers
235
views
0
answers
Binning of reads vs. binning of contigs in metagenomics
... I'm new to the field of metagenomics and I have been reading research work done on binning in metagenomics. I came across two types of metagenomics binning tools; 1. binning of reads (before assembly) - ex. [MetaProb][1], [BiMeta][2] 2. binning of contigs (after assembly) - ex. [MaxBin][3], [Met ...
binning metagenomics written 8 weeks ago by vijinim50

Latest awards to vijinim

Supporter 5 weeks ago, voted at least 25 times.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1111 users visited in the last hour