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6.4k
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Comment: C: How to filter Michigan genotype imputation results
4.5 years ago by anamaria ▴ 220
0
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0
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504
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Why ukb_gen_samples_to_remove function takes forever to execute?
ukbtools
4.5 years ago by anamaria ▴ 220
0
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0
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6.5k
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Comment: C: [SOLVED] Get LD data for any two SNPs
4.6 years ago by anamaria ▴ 220
2
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2
replies
3.9k
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extracting SNPs from .vcf file along with CHR and POS
vcftools
updated 3.1 years ago by 44k • written 4.6 years ago by ▴ 220
1
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0
replies
1.9k
views
How to resolve "Error: All remaining samples for --glm phenotype 'pheno' are cases" in Plink?
plink
4.6 years ago by anamaria ▴ 220
0
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1
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6.4k
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Comment: C: relationship between PI_HAT and --king-cutoff coefficient?
4.7 years ago by anamaria ▴ 220
0
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1
reply
29k
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Comment: C: Ibd (Identity By Descent) And The Chosen Value Of Pi_Hat
4.7 years ago by anamaria ▴ 220
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0
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5.0k
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Comment: C: Extract a list of SNPs from a BCF file
4.8 years ago by anamaria ▴ 220
0
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1
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5.0k
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Comment: C: Extract a list of SNPs from a BCF file
4.8 years ago by anamaria ▴ 220
0
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1
reply
5.0k
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Comment: C: Extract a list of SNPs from a BCF file
4.8 years ago by anamaria ▴ 220
0
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1
reply
2.1k
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Comment: C: how do I decide which individuals to remove in plink.genome in IBD analysis?
4.8 years ago by anamaria ▴ 220
0
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1
reply
5.0k
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Comment: C: Extract a list of SNPs from a BCF file
4.8 years ago by anamaria ▴ 220
0
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1
reply
5.0k
views
Comment: C: Extract a list of SNPs from a BCF file
4.8 years ago by anamaria ▴ 220
0
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1
reply
2.1k
views
Comment: C: how do I decide which individuals to remove in plink.genome in IBD analysis?
4.8 years ago by anamaria ▴ 220
0
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1
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2.1k
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Comment: C: how do I decide which individuals to remove in plink.genome in IBD analysis?
4.8 years ago by anamaria ▴ 220
1
vote
7
replies
2.1k
views
how do I decide which individuals to remove in plink.genome in IBD analysis?
plink ibd
updated 4.8 years ago by ★ 4.8k • written 4.8 years ago by ▴ 220
0
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1
reply
5.0k
views
Comment: C: Extract a list of SNPs from a BCF file
4.8 years ago by anamaria ▴ 220
0
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1
reply
5.0k
views
Comment: C: Extract a list of SNPs from a BCF file
4.8 years ago by anamaria ▴ 220
3
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0
replies
1.9k
views
how to do QC on data imputed on Michigan Imputation Server?
plink gwas imputation
4.8 years ago by anamaria ▴ 220
0
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1
reply
1.5k
views
preparing files for imputation on Michigan Imputation Server
imputation Michigan Imputation Server HRC
4.8 years ago by anamaria ▴ 220
1
vote
4
replies
2.5k
views
Hwo to do quality control steps on UKBiobank data?
ukbiobank
updated 4.9 years ago by ★ 4.8k • written 5.5 years ago by ▴ 220
0
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0
replies
840
views
how to generate covariance matrices for UKB data?
ukb covariancematrix
5.0 years ago by anamaria ▴ 220
0
votes
1
reply
822
views
How to find which genes from my expression data are eGenes for all tissues in GTEX V7?
gene
5.0 years ago by anamaria ▴ 220
1
vote
0
replies
1.3k
views
How to reduce number of entries in QQ plot?
qq
5.2 years ago by anamaria ▴ 220
0
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0
replies
2.0k
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Comment: C: What is the best tool for doing Quality Control checks on my raw RNA-seq data?
5.2 years ago by anamaria ▴ 220
1
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1
reply
2.0k
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Comment: C: What is the best tool for doing Quality Control checks on my raw RNA-seq data?
5.2 years ago by anamaria ▴ 220
5
votes
4
replies
2.0k
views
What is the best tool for doing Quality Control checks on my raw RNA-seq data?
RNA-Seq qc fastqc
updated 5.2 years ago by ▴ 110 • written 5.2 years ago by ▴ 220
1
vote
1
reply
2.3k
views
Issue with renaming METAL output
metal
updated 5.3 years ago by 20 • written 5.6 years ago by ▴ 220
0
votes
0
replies
1.1k
views
How to calculate TPR, true positive rate,for tissue sharing between two different tissues?
tpr
5.3 years ago by anamaria ▴ 220
0
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0
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2.1k
views
How to format plink2 pheno file?
plink2
5.4 years ago by anamaria ▴ 220
0
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0
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2.5k
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Comment: C: Hwo to do quality control steps on UKBiobank data?
5.5 years ago by anamaria ▴ 220
0
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0
replies
1.3k
views
What to do with the output of apt-geno-qc?
affymetrix
5.5 years ago by anamaria ▴ 220
0
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0
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2.7k
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Comment: C: What software to use to asses phenotypic information from ULBiobank dataset?
5.5 years ago by anamaria ▴ 220
0
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0
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1.4k
views
How to extract phenotype from UKBiobank data?
ukbiobnk
5.5 years ago by anamaria ▴ 220
0
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0
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2.7k
views
Comment: C: What software to use to asses phenotypic information from ULBiobank dataset?
5.5 years ago by anamaria ▴ 220
0
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2
replies
2.3k
views
how to perform GWAS on UKBiobank data?
ukbiobank
5.5 years ago by anamaria ▴ 220
0
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1
reply
2.7k
views
Comment: C: What software to use to asses phenotypic information from ULBiobank dataset?
5.5 years ago by anamaria ▴ 220
0
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1
reply
2.7k
views
Comment: C: What software to use to asses phenotypic information from ULBiobank dataset?
5.5 years ago by anamaria ▴ 220
3
votes
12
replies
2.7k
views
What software to use to asses phenotypic information from ULBiobank dataset?
ukbiobank
updated 5.5 years ago by ▴ 10 • written 5.5 years ago by ▴ 220
0
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0
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2.7k
views
Comment: C: What software to use to asses phenotypic information from ULBiobank dataset?
5.5 years ago by anamaria ▴ 220
0
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2
replies
2.7k
views
Comment: C: What software to use to asses phenotypic information from ULBiobank dataset?
5.5 years ago by anamaria ▴ 220
0
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0
replies
1.4k
views
How to run apt-geno-qc with call rate and treshold?
Affymetrix
5.5 years ago by anamaria ▴ 220
0
votes
0
replies
862
views
How to determine a list of independat eQTLs?
EQTL R
5.6 years ago by anamaria ▴ 220
0
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1
reply
1.4k
views
Comment: C: How to do confidence bounds on False Discovery rate?
5.6 years ago by anamaria ▴ 220
0
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4
replies
1.4k
views
How to do confidence bounds on False Discovery rate?
R confidence bounds FDR
5.6 years ago by anamaria ▴ 220
0
votes
0
replies
12k
views
Comment: C: How to order bars in barplot in ggplot?
5.6 years ago by anamaria ▴ 220
0
votes
1
reply
937
views
Resolving issue with ukbtools
ukbtools R
updated 5.6 years ago by 20 • written 5.6 years ago by ▴ 220
6
votes
5
replies
12k
views
How to order bars in barplot in ggplot?
R
updated 5.6 years ago by 12k • written 5.6 years ago by ▴ 220
0
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0
replies
12k
views
Comment: C: How to order bars in barplot in ggplot?
5.6 years ago by anamaria ▴ 220
0
votes
3
replies
981
views
Issues with col2rgb
R
5.6 years ago by anamaria ▴ 220
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