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5.4k
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Comment: C: How to filter Michigan genotype imputation results
2.7 years ago by anamaria ▴ 180
0
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0
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374
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Why ukb_gen_samples_to_remove function takes forever to execute?
ukbtools
2.7 years ago by anamaria ▴ 180
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0
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4.8k
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Comment: C: [SOLVED] Get LD data for any two SNPs
2.8 years ago by anamaria ▴ 180
2
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2
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2.3k
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extracting SNPs from .vcf file along with CHR and POS
vcftools
updated 15 months ago by 38k • written 2.8 years ago by ▴ 180
1
vote
0
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1.2k
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How to resolve "Error: All remaining samples for --glm phenotype 'pheno' are cases" in Plink?
plink
2.8 years ago by anamaria ▴ 180
0
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1
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3.4k
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Comment: C: relationship between PI_HAT and --king-cutoff coefficient?
2.9 years ago by anamaria ▴ 180
0
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1
reply
25k
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Comment: C: Ibd (Identity By Descent) And The Chosen Value Of Pi_Hat
2.9 years ago by anamaria ▴ 180
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0
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3.5k
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Comment: C: Extract a list of SNPs from a BCF file
2.9 years ago by anamaria ▴ 180
0
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1
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3.5k
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Comment: C: Extract a list of SNPs from a BCF file
2.9 years ago by anamaria ▴ 180
0
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1
reply
3.5k
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Comment: C: Extract a list of SNPs from a BCF file
2.9 years ago by anamaria ▴ 180
0
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1
reply
1.3k
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Comment: C: how do I decide which individuals to remove in plink.genome in IBD analysis?
2.9 years ago by anamaria ▴ 180
0
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1
reply
3.5k
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Comment: C: Extract a list of SNPs from a BCF file
2.9 years ago by anamaria ▴ 180
0
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1
reply
3.5k
views
Comment: C: Extract a list of SNPs from a BCF file
2.9 years ago by anamaria ▴ 180
0
votes
1
reply
1.3k
views
Comment: C: how do I decide which individuals to remove in plink.genome in IBD analysis?
2.9 years ago by anamaria ▴ 180
0
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1
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1.3k
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Comment: C: how do I decide which individuals to remove in plink.genome in IBD analysis?
2.9 years ago by anamaria ▴ 180
1
vote
7
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1.3k
views
how do I decide which individuals to remove in plink.genome in IBD analysis?
plink ibd
updated 2.9 years ago by ★ 4.6k • written 2.9 years ago by ▴ 180
0
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1
reply
3.5k
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Comment: C: Extract a list of SNPs from a BCF file
2.9 years ago by anamaria ▴ 180
0
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1
reply
3.5k
views
Comment: C: Extract a list of SNPs from a BCF file
2.9 years ago by anamaria ▴ 180
3
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0
replies
1.5k
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how to do QC on data imputed on Michigan Imputation Server?
plink gwas imputation
3.0 years ago by anamaria ▴ 180
0
votes
1
reply
992
views
preparing files for imputation on Michigan Imputation Server
imputation Michigan Imputation Server HRC
3.0 years ago by anamaria ▴ 180
1
vote
4
replies
1.8k
views
Hwo to do quality control steps on UKBiobank data?
ukbiobank
updated 3.1 years ago by ★ 4.6k • written 3.6 years ago by ▴ 180
0
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0
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602
views
how to generate covariance matrices for UKB data?
ukb covariancematrix
3.1 years ago by anamaria ▴ 180
0
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1
reply
643
views
How to find which genes from my expression data are eGenes for all tissues in GTEX V7?
gene
3.2 years ago by anamaria ▴ 180
1
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0
replies
980
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How to reduce number of entries in QQ plot?
qq
3.4 years ago by anamaria ▴ 180
0
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0
replies
1.2k
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Comment: C: What is the best tool for doing Quality Control checks on my raw RNA-seq data?
3.4 years ago by anamaria ▴ 180
1
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1
reply
1.2k
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Comment: C: What is the best tool for doing Quality Control checks on my raw RNA-seq data?
3.4 years ago by anamaria ▴ 180
5
votes
4
replies
1.2k
views
What is the best tool for doing Quality Control checks on my raw RNA-seq data?
RNA-Seq qc fastqc
updated 3.4 years ago by ▴ 100 • written 3.4 years ago by ▴ 180
1
vote
1
reply
1.6k
views
Issue with renaming METAL output
metal
updated 3.5 years ago by 20 • written 3.8 years ago by ▴ 180
0
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0
replies
795
views
How to calculate TPR, true positive rate,for tissue sharing between two different tissues?
tpr
3.5 years ago by anamaria ▴ 180
0
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0
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1.6k
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How to format plink2 pheno file?
plink2
3.6 years ago by anamaria ▴ 180
0
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0
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1.8k
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Comment: C: Hwo to do quality control steps on UKBiobank data?
3.6 years ago by anamaria ▴ 180
0
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0
replies
900
views
What to do with the output of apt-geno-qc?
affymetrix
3.6 years ago by anamaria ▴ 180
0
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0
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1.7k
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Comment: C: What software to use to asses phenotypic information from ULBiobank dataset?
3.7 years ago by anamaria ▴ 180
0
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0
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1.1k
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How to extract phenotype from UKBiobank data?
ukbiobnk
3.7 years ago by anamaria ▴ 180
0
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0
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1.7k
views
Comment: C: What software to use to asses phenotypic information from ULBiobank dataset?
3.7 years ago by anamaria ▴ 180
0
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2
replies
1.8k
views
how to perform GWAS on UKBiobank data?
ukbiobank
3.7 years ago by anamaria ▴ 180
0
votes
1
reply
1.7k
views
Comment: C: What software to use to asses phenotypic information from ULBiobank dataset?
3.7 years ago by anamaria ▴ 180
0
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1
reply
1.7k
views
Comment: C: What software to use to asses phenotypic information from ULBiobank dataset?
3.7 years ago by anamaria ▴ 180
3
votes
12
replies
1.7k
views
What software to use to asses phenotypic information from ULBiobank dataset?
ukbiobank
updated 3.7 years ago by ▴ 10 • written 3.7 years ago by ▴ 180
0
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0
replies
1.7k
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Comment: C: What software to use to asses phenotypic information from ULBiobank dataset?
3.7 years ago by anamaria ▴ 180
0
votes
2
replies
1.7k
views
Comment: C: What software to use to asses phenotypic information from ULBiobank dataset?
3.7 years ago by anamaria ▴ 180
0
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0
replies
1.1k
views
How to run apt-geno-qc with call rate and treshold?
Affymetrix
3.7 years ago by anamaria ▴ 180
0
votes
0
replies
663
views
How to determine a list of independat eQTLs?
EQTL R
3.7 years ago by anamaria ▴ 180
0
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1
reply
943
views
Comment: C: How to do confidence bounds on False Discovery rate?
3.7 years ago by anamaria ▴ 180
0
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4
replies
943
views
How to do confidence bounds on False Discovery rate?
R confidence bounds FDR
3.7 years ago by anamaria ▴ 180
0
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0
replies
11k
views
Comment: C: How to order bars in barplot in ggplot?
3.7 years ago by anamaria ▴ 180
0
votes
1
reply
695
views
Resolving issue with ukbtools
ukbtools R
updated 3.7 years ago by 20 • written 3.8 years ago by ▴ 180
6
votes
5
replies
11k
views
How to order bars in barplot in ggplot?
R
updated 3.7 years ago by 11k • written 3.7 years ago by ▴ 180
0
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0
replies
11k
views
Comment: C: How to order bars in barplot in ggplot?
3.7 years ago by anamaria ▴ 180
0
votes
0
replies
705
views
Answer: A: Issues with col2rgb
3.8 years ago by anamaria ▴ 180
140 results • Page 2 of 3
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