User: tyler.weirick
tyler.weirick • 120
- Reputation:
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- Germany
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- 4 days, 5 hours ago
- Joined:
- 6 years, 9 months ago
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Posts by tyler.weirick
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0
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1.1k
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... Hi Julie, I liked your paper. I am finishing up my own paper and would like to cite yours. Do you have any estimate regarding when it will be published?
...
written 3.4 years ago by
tyler.weirick • 120
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... Why not just use one of the faster pseudo-alignment assemblers? I have heard good things about Kallisto http://pachterlab.github.io/kallisto/ . Supposedly it is like 1000 times faster than a Tophat+Cufflinks assembly. I think there are a number of other fast assemblers like this https://en.wikipedi ...
written 3.5 years ago by
tyler.weirick • 120
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... I am working on a paper that will feature a database with novel lncRNAs. I have searched for several days trying to find information about good design practices for accession numbers. Unfortunalty everything seems to contain the word accession, so I am having difficulty finding material (if it even ...
written 3.8 years ago by
tyler.weirick • 120
• updated
3.8 years ago by
Sean Davis ♦ 25k
4
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1
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4.1k
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... Part of a paper I am writing involves comparing different human genome assemblies. I would like to have some kind of citation for the assemblies hg18, hg19, and hg38. It seems like many other papers do not cite them, for example http://nar.oxfordjournals.org/content/early/2010/10/18/nar.gkq963.full ...
written 3.9 years ago by
tyler.weirick • 120
• updated
3.9 years ago by
keith • 130
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... I encountered this problem on Ubuntu 12.04 running pymol verson 1.4.1 (the version installed with apt-get) . I removed that version and reinstalled pymol 1.6.0.0 and was able to get it to work.
...
written 5.2 years ago by
tyler.weirick • 120
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3.1k
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... I am using various set of enzymes organized into classes in my research. As part of this I use PSI-BLAST to increase the size of my data sets. I known there is a large amount of overlap returned in the results but I would like to get a better view of what is going on exactly. I would prefer not to r ...
written 5.7 years ago by
tyler.weirick • 120
12
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4.4k
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6 follow
3
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... I am working on machine learning project using SVMs. One of the steps in the preparation of my data sets is to reduce the sequence similarity in each class to 40%. I have compared CD-HIT and BLASTCLUST for this step. BLASTCLUST keeps more sequences that CD-HIT. It is tempting to use this data as lar ...
written 5.7 years ago by
tyler.weirick • 120
• updated
4.5 years ago by
Jose Manuel Duarte • 280
19
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3.8k
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... Does a script exist that given a species name will give you kingdom which the input belongs to? I am doing data analysis on very large sets of blast results and something like this would be a huge help. I am thinking about writing one myself but if something like this exists I would rather not reinv ...
written 6.0 years ago by
tyler.weirick • 120
• updated
6.0 years ago by
SES ♦ 8.1k
Latest awards to tyler.weirick
Popular Question
14 months ago,
created a question with more than 1,000 views.
For Looking for information on designing effective accession numbers.
Student
15 months ago,
asked a question with at least 3 up-votes.
For Blastclust Has Been Depreciated. Does Anyone Know Why?
Appreciated
23 months ago,
created a post with more than 5 votes.
For Blastclust Has Been Depreciated. Does Anyone Know Why?
Popular Question
2.7 years ago,
created a question with more than 1,000 views.
For Analyzing Overlap Of Results Between Blast Queries. Is There A Tool For This? If Not What About This Approach?
Supporter
3.5 years ago,
voted at least 25 times.
Popular Question
5.1 years ago,
created a question with more than 1,000 views.
For Blastclust Has Been Depreciated. Does Anyone Know Why?
Popular Question
5.1 years ago,
created a question with more than 1,000 views.
For Does A Script Exist That Given A Species Name Will Give You Kingdom Which The Input Belongs To?
Popular Question
5.1 years ago,
created a question with more than 1,000 views.
For Analyzing Overlap Of Results Between Blast Queries. Is There A Tool For This? If Not What About This Approach?
Student
5.1 years ago,
asked a question with at least 3 up-votes.
For Blastclust Has Been Depreciated. Does Anyone Know Why?
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