User: alesierra28

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Posts by alesierra28

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Input file LD in Haploview
... Hi, I have a list of SNP which I can load into tassel but in order to load that same file to Haploview what format should it be? Already tried changing the numbers -1, 1, 2, 3, 4 for each base saved as .hmp (txt) and then try to open it as a HapMap and I always get an error that something is wrong w ...
ld next-gen haploview snp tassel written 7 months ago by alesierra280
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Understanding LD with tassel results
... Hi Can some please help me to understand how to interpret the results that i get from a LD matrix generated by Tassel, technically I get 17 columns with the next headers: Locus1 Position1 Site1 NumberOfStates1 States1 Frequency1 Locus2 Position2 Site2 NumberOfStates2 States2 Frequency2 Dis ...
gwas linkage disequilibrium tassel ld gbs written 7 months ago by alesierra280 • updated 7 months ago by Biostar ♦♦ 20

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