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0
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596
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Comment: Comment: How to compare peak profiles for a subset of ChIPseq genes
8 months ago by bertb ▴ 20
2
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2
replies
596
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How to compare peak profiles for a subset of ChIPseq genes
DiffBind composite-peak-profile ChIP-seq
8 months ago by bertb ▴ 20
0
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1
reply
543
views
ChIPQC read depth doesn't match BAM files
ChIPseq ChIPQC
updated 21 months ago by ★ 2.0k • written 21 months ago by ▴ 20
1
vote
1
reply
1.2k
views
DiffBind - Comparing normalization/background methods - how to create a heatmap (as in 7.5)?
DiffBind normalization ChIPseq
updated 23 months ago by ★ 2.0k • written 23 months ago by ▴ 20
0
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0
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822
views
Comment: Comment: help for dba.count settings for RNAPII-ChIP using GRanges peakset
2.2 years ago by bertb ▴ 20
1
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2
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822
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help for dba.count settings for RNAPII-ChIP using GRanges peakset
DiffBind ChIPseq
2.2 years ago by bertb ▴ 20
0
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0
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1.5k
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Comment: Comment: Problems with dba.analyze in DiffBind - are blacklists/greylists required to obt
2.2 years ago by bertb ▴ 20
3
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2
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1.5k
views
Problems with dba.analyze in DiffBind - are blacklists/greylists required to obtain DESeq sites?
blacklist dba.analyze ChIPseq greylist diffbind
2.2 years ago by bertb ▴ 20
0
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0
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986
views
Comment: Comment: DiffBind normalization returned NULL
2.2 years ago by bertb ▴ 20
3
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2
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986
views
DiffBind normalization returned NULL
DiffBind dba.normalize normalization ChIPseq
2.2 years ago by bertb ▴ 20
0
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1
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1.0k
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Comment: C: error when running NGS tools in bash script
3.4 years ago by bertb ▴ 20
0
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4
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1.0k
views
error when running NGS tools in bash script
software error automation scripting
3.4 years ago by bertb ▴ 20
3
votes
10
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3.0k
views
how to identify where multi-mappers, or "non primary hits" are mapping to
RNA-Seq alignment next-gen
updated 3.4 years ago by 20 • written 3.5 years ago by ▴ 20
0
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0
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806
views
bam_stat.py and featureCounts stats don't seem to make sense (to me)
RNA-Seq alignment
3.4 years ago by bertb ▴ 20
0
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0
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3.7k
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Comment: C: How to filter out chromosome regions from a .bam file
3.4 years ago by bertb ▴ 20
8
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4
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3.7k
views
How to filter out chromosome regions from a .bam file
RNA-Seq alignment
updated 3.4 years ago by 3.0k • written 3.4 years ago by ▴ 20
0
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0
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679
views
How to unique mappers become concordant pairs aligned >1 times
RNA-Seq alignment
3.5 years ago by bertb ▴ 20
0
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0
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3.0k
views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
3.5 years ago by bertb ▴ 20
0
votes
1
reply
3.0k
views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
3.5 years ago by bertb ▴ 20
0
votes
1
reply
3.0k
views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
3.5 years ago by bertb ▴ 20
0
votes
1
reply
3.0k
views
Comment: C: how to identify where multi-mappers, or "non primary hits" are mapping to
3.5 years ago by bertb ▴ 20
0
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0
replies
1.8k
views
Comment: C: featureCount with high multimapping fragments
3.5 years ago by bertb ▴ 20
0
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0
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1.4k
views
Comment: C: Picard CreateSequenceDictionary - file doesn't look right?
3.5 years ago by bertb ▴ 20
0
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1
reply
1.4k
views
Comment: C: Picard CreateSequenceDictionary - file doesn't look right?
3.5 years ago by bertb ▴ 20
1
vote
6
replies
1.4k
views
Picard CreateSequenceDictionary - file doesn't look right?
RNA-Seq sequencing
updated 3.5 years ago by 20 • written 3.5 years ago by ▴ 20
0
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1
reply
1.4k
views
Comment: C: Picard CreateSequenceDictionary - file doesn't look right?
3.5 years ago by bertb ▴ 20
0
votes
1
reply
1.8k
views
Comment: C: featureCount with high multimapping fragments
3.5 years ago by bertb ▴ 20
0
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4
replies
1.8k
views
featureCount with high multimapping fragments
RNA-Seq sequencing
updated 3.5 years ago by 14k • written 3.5 years ago by ▴ 20
0
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1
reply
1.5k
views
Comment: C: htseq_counts process "Killed" during SAM alignment record pairs processed
3.6 years ago by bertb ▴ 20
0
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3
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1.5k
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htseq_counts process "Killed" during SAM alignment record pairs processed
RNA-Seq next-gen
3.6 years ago by bertb ▴ 20
0
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0
replies
938
views
Comment: C: Errors with Picard CollectRnaSeqMetrics
3.6 years ago by bertb ▴ 20
3
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2
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938
views
Errors with Picard CollectRnaSeqMetrics
RNA-Seq alignment software error
updated 3.6 years ago by 161k • written 3.6 years ago by ▴ 20
0
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0
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1.3k
views
Comment: C: check_strandedness error with how_are_we_stranded_here tool
3.6 years ago by bertb ▴ 20
0
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1
reply
1.3k
views
Comment: C: check_strandedness error with how_are_we_stranded_here tool
3.6 years ago by bertb ▴ 20
1
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4
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1.3k
views
check_strandedness error with how_are_we_stranded_here tool
RNA-Seq sequencing assembly
3.6 years ago by bertb ▴ 20
0
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1
reply
1.1k
views
Comment: C: how_are_we_stranded_here install issue on Xubuntu
3.6 years ago by bertb ▴ 20
0
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0
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1.1k
views
Comment: C: how_are_we_stranded_here install issue on Xubuntu
3.6 years ago by bertb ▴ 20
4
votes
5
replies
1.1k
views
how_are_we_stranded_here install issue on Xubuntu
RNA-Seq sequencing Assembly
updated 3.6 years ago by 43k • written 3.6 years ago by ▴ 20
0
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1
reply
3.6k
views
Comment: C: MACS2 won't build model - too few paired peaks, but I'm not using paired data
5.4 years ago by bertb ▴ 20
0
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0
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3.6k
views
Comment: C: MACS2 won't build model - too few paired peaks, but I'm not using paired data
5.4 years ago by bertb ▴ 20
0
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5
replies
3.6k
views
MACS2 won't build model - too few paired peaks, but I'm not using paired data
ChIP-Seq
5.4 years ago by bertb ▴ 20
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