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Posts by naveen_gabriel
... Observed to Expected CpG is calculated as below : Obs/Exp CpG = Number of CpG * N / (Number of C * Number of G) where N = length of sequence. I also don't understand the expected CpG which is: Expected = (Number of C * Number of G)/ N Can someone give an example or intuiti ...
... To fit the brownian motion for independent evolution of traits i used below code: rownames(carni)<-gsub("_",".",rownames(carni)) #Renaming to match the tip of tree #Independent Evolution brown_indepen <- mvBM(carni_tree,carni,param=list(constraint="diagonal")) mvBM is the functi ...
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