User: kamoltip.lao

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Posts by kamoltip.lao

<prev • 8 results • page 1 of 1 • next >
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Comment: C: How can I view and manage the Trinity.fasta by bash
... Thank you so much, I got it. ...
written 5 weeks ago by kamoltip.lao0
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How can I view and manage the Trinity.fasta by bash
... Hi everyone, I'm a beginner and learning to analyze the sequence by practicing. Please give me a suggestion, How can I view and manage the assembly transcriptome from Trinity as Trinity.fasta by bash? $ less Trinity.fasta >TRINITY_DN30765_c0_g1_i1 len=228 path=[0:0-227] TGGCGAAGTT ...
rna-seq written 5 weeks ago by kamoltip.lao0 • updated 5 weeks ago by lieven.sterck3.9k
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Comment: C: Problem with fastq file
... You're right, I use macOS 10.14.2. After I installed GNU coreutils, I can use `gzcat test.fastq.gz | head` without any error. Thank you so much for kind help ...
written 9 weeks ago by kamoltip.lao0
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Answer: A: Problem with fastq file
... Dear all, Thank you so much for suggestions from everyone, I tried them all and I would like to inform everyone about my result. For `$ zcat test.fastq.gz | head` it does not function in my case. It always shows the error. `zcat: can't stat: test.fastq.gz (test.fastq.gz.Z): No such file or direct ...
written 9 weeks ago by kamoltip.lao0
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Comment: C: Problem with fastq file
... I'm sorry, this is my first post. I'll improve it next time. And thank you so much for your kind suggestion, I'm a beginner and don't have enough background in UNIX as you mentioned. I'll spend more time on the basics of Unix. Thank you so much ...
written 10 weeks ago by kamoltip.lao0
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Comment: A: Problem with fastq file
... I ran zcat and the result was an error $ zcat ~/RNA-seq/Liu2015/SRR1272191_IDCLV_1.fastq.gz| head zcat: can't stat: ~/RNA-seq/Liu2015/SRR1272191_IDCLV_1.fastq.gz (~/RNA-seq/Liu2015/SRR1272191_IDCLV_1.fastq.gz.Z): No such file or directory So, I tried to use gunzip and head it, $ gunz ...
written 10 weeks ago by kamoltip.lao0 • updated 10 weeks ago by WouterDeCoster36k
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Comment: C: Problem with fastq file
... I check it in the preferences of the terminal the default is UTF-8, I tried to enable all encodings but the result was the same. Thanks ...
written 10 weeks ago by kamoltip.lao0
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Problem with fastq file
... Dear all, I tried to open the example RNA-seq raw reads by using the simple command like head, but I got the error as shown below $ head ~/RNA-seq/Liu2015/SRR1272191_IDCLV_1.fastq.gz ??˲?Ʋ%8?_Qf2K1?)?/? gp+̪~??{?֣??p_ `?p ?K???&?[?΀???Z??????|;?????1??????_?Yu?fU???????խ:???????T?????? ...
rna-seq written 10 weeks ago by kamoltip.lao0

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Scholar 9 weeks ago, created an answer that has been accepted. For A: Problem with fastq file

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