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questions
0
votes
0
replies
260
views
TSS Enrichment error in Signac
Signac
scRNA-ATAC
ensdb
9 weeks ago by
kousi31
▴ 100
2
votes
1
reply
305
views
How to solve unloadNamespace(package) : namespace in R
R
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
kousi31
▴ 100
1
vote
2
replies
244
views
How to use gsub inside mapply to assign names to Seurat objects
scATAC-seq
seurat
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
kousi31
▴ 100
0
votes
7
replies
505
views
Iterate through Seurat object to add patient information
R
Seurat
updated 12 weeks ago by
Ram
43k • written 12 weeks ago by
kousi31
▴ 100
2
votes
1
reply
317
views
will the features.tsv file from 10X chromium be same for all donor individuals?
scRNA-seq
chromium
10x
single-cell
updated 12 weeks ago by
Ram
43k • written 3 months ago by
kousi31
▴ 100
0
votes
1
reply
1.3k
views
cytoscape: Network Analyser error - Network interpretation null
software error
cytoscape
updated 3.6 years ago by
jgarces
▴ 50 • written 3.9 years ago by
kousi31
▴ 100
4
votes
12
replies
5.3k
views
Salmon installation error
software error
updated 3.7 years ago by
20190634
• 0 • written 5.0 years ago by
kousi31
▴ 100
7
votes
4
replies
2.7k
views
How to make box plot for different gene types
R
Box plot
RNA-Seq
updated 2.2 years ago by
cpad0112
21k • written 3.7 years ago by
kousi31
▴ 100
0
votes
2
replies
1.2k
views
Extracting features corresponding to low entropy regions from RNAfold output
RNAfold
RNA secondary structure
updated 3.7 years ago by
khorms
▴ 230 • written 3.8 years ago by
kousi31
▴ 100
0
votes
3
replies
2.7k
views
ChromoMap Error in 1:nrow(temp.df) : argument of length 0
R
chromoMap
software error
3.8 years ago by
kousi31
▴ 100
2
votes
4
replies
1.3k
views
Specifying unequal replicates in deseq2 with htseq-count input
DEseq2
RNA-Seq
DE analysis
3.8 years ago by
kousi31
▴ 100
2
votes
1
reply
989
views
Enhanced volcano plot - Over-ride colouring scheme with custom key-value pairs for both log2FC and p value
enhanced volcano plot
software
R
deseq2
updated 3.8 years ago by
Kevin Blighe
87k • written 3.8 years ago by
kousi31
▴ 100
1
vote
8
replies
1.7k
views
Error while running CPAT
software error
3.8 years ago by
kousi31
▴ 100
0
votes
3
replies
1.9k
views
How to prepare ranked-gene list for statistical enrichment test in PANTHER database
panther
ranked-gene-list
pathway-enrichment
3.9 years ago by
kousi31
▴ 100
6
votes
3
replies
5.0k
views
How to select multiple nodes with mouse - left click and drag
cytoscape
software
updated 7 weeks ago by
washingtonwuyienigma
• 0 • written 3.9 years ago by
kousi31
▴ 100
3
votes
2
replies
1.2k
views
Merged vs. Ensembl GTF for htseq-count
RNA-Seq
htseq-count
updated 3.9 years ago by
Kristoffer Vitting-Seerup
★ 4.0k • written 3.9 years ago by
kousi31
▴ 100
2
votes
3
replies
1.7k
views
How to use output of PANTHER Enrichment Test as input to cytoscape
panther
cytoscape
3.9 years ago by
kousi31
▴ 100
0
votes
1
reply
1.6k
views
KEGG database for GSEA
GSEA
kegg
RNA-Seq
enrichment-pathway analysis
3.9 years ago by
kousi31
▴ 100
1
vote
3
replies
2.4k
views
How to feed the sequence dictionary created with multifasta file into python function
python
multi-fasta
function
updated 4.0 years ago by
massa.kassa.sc3na
▴ 590 • written 4.0 years ago by
kousi31
▴ 100
0
votes
0
replies
610
views
Do anyone know how to interpret Graphclust ouput files?
Graphclust
RNA secondary structure
4.5 years ago by
kousi31
▴ 100
1
vote
3
replies
1.6k
views
Installation error - RNAPLEX
software error
RNAplex
makefile
updated 4.5 years ago by
ATpoint
81k • written 4.5 years ago by
kousi31
▴ 100
8
votes
13
replies
4.2k
views
8 follow
Doubt - installing LncTar software
software installation
Lnctar
perl
updated 10 months ago by
Jeremiah
• 0 • written 4.7 years ago by
kousi31
▴ 100
0
votes
2
replies
1.2k
views
Which axis to look for in PCA plot to understand the sample clustering
PCA
RNA-Seq
QC
clustering
updated 4.7 years ago by
swbarnes2
14k • written 4.7 years ago by
kousi31
▴ 100
0
votes
1
reply
686
views
FIRE installation error
software error
4.7 years ago by
kousi31
▴ 100
0
votes
3
replies
1.2k
views
How to obtain multiple sequence alignments of genomes of selected vertebrate species?
multiple-sequence-alignment
updated 11 months ago by
Ram
43k • written 4.7 years ago by
kousi31
▴ 100
0
votes
6
replies
2.3k
views
stringtie2 error : ./samtools-0.1.18/bgzf.h:29:10: fatal error: zlib.h: No such file or directory
software error
stringtie2
4.7 years ago by
kousi31
▴ 100
4
votes
10
replies
3.7k
views
How to quantify gene expression when stringtie considers two adjacent genes as single gene?
stringtie
deseq2
RNA-Seq
htseq
DE
4.7 years ago by
kousi31
▴ 100
0
votes
0
replies
947
views
What does the read counts in IGV indicate?
RNA-Seq
Read-Counts
Lncrna
4.8 years ago by
kousi31
▴ 100
6
votes
2
replies
4.4k
views
How to obtain transcript level TPM using stringtie?
RNA-Seq
stringtie
updated 4.9 years ago by
ruisergioluis
▴ 40 • written 4.9 years ago by
kousi31
▴ 100
0
votes
0
replies
752
views
which hmm file to use from Gene 3D database
Database
RNA-Seq
4.9 years ago by
kousi31
▴ 100
0
votes
1
reply
1.6k
views
A doubt in 10X chromium linked reads
sequencing
genome
4.9 years ago by
kousi31
▴ 100
1
vote
13
replies
3.7k
views
Ambiguous reads in htseq-count
RNA-Seq
htseq-count
5.0 years ago by
kousi31
▴ 100
0
votes
3
replies
2.2k
views
which feature type and id attribute to use in ht-seq count
RNA-Seq
5.0 years ago by
kousi31
▴ 100
0
votes
5
replies
1.9k
views
How to extract fasta sequence of lncRNA from whole ncRNA fasta of ucsc ftp download?
sequence
5.0 years ago by
kousi31
▴ 100
1
vote
3
replies
5.3k
views
SRA prefetch error
software error
updated 5.3 years ago by
rrbutleriii
▴ 260 • written 5.3 years ago by
kousi31
▴ 100
35 results • Page
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