User: m.wekking

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m.wekking10
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Posts by m.wekking

<prev • 4 results • page 1 of 1 • next >
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Finding deferentially active regions with DESeq2
... I have a File that contains certain enhancer regions per chromosome and per region how many reads are found from different samples. The 1 and the 2 stand for the two different groups I have. The original file is tab delimited. I.E.: $ cat enhancers.bed chr | start | end | sample1a | sample ...
R deseq2 chip-seq written 8 weeks ago by m.wekking10 • updated 8 weeks ago by shawn.w.foley180
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Comment: C: find overlapping Chip-seq peaks and return outerboundries
... For This current project I have in total 3 different files but for other projects it is possible that I have more than five repeats .. So I need a solution that works for a varying amount of files ... ...
written 10 weeks ago by m.wekking10
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Comment: C: find overlapping Chip-seq peaks and return outerboundries
... Thank you very much! will this also work if I have more than 2 .bed files? ...
written 10 weeks ago by m.wekking10
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find overlapping Chip-seq peaks and return outerboundries
... I have .bed files with different peaks and I need to find the overlap, but when two peaks overlap I want the program to return the outer boundries of the two peaks, i.e. $ cat sample1.bed chr1 20 40 chr1 60 80 chr2 80 120 $ cat sample2.bed chr1 17 35 ...
overlap chip-seq written 10 weeks ago by m.wekking10 • updated 10 weeks ago by ATpoint13k

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