User: wolffj.bioinf

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Posts by wolffj.bioinf

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Comment: C: Hicexplorer error using hicBuildMatrix: no such file as qc_template.html
... Yes should be possible and we updated pip to a fixed version. ...
written 9 months ago by wolffj.bioinf10
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Answer: A: Hicexplorer error using hicBuildMatrix: no such file as qc_template.html
... Hi, looks like a bug from the pip version. Please use conda package manager. Best, Joachim ...
written 12 months ago by wolffj.bioinf10
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Answer: A: hicPlotMatrix memory error
... Hi, the problem is quite simple: You have too less memory to plot it. Unfortunately, matplotlib is demanding a lot of memory to plot images. A solution would be to plot fewer chromosomes, to plot with a lower resolution or to switch to a more powerful machine. For more resources we offer our web s ...
written 12 months ago by wolffj.bioinf10
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Answer: A: what is the lowest computer set up for hicBuildmatrix?
... Hi, I would recommend at least 32 GB of memory to build a Hi-C interaction matrix, you can set the number of used cores to 2 to decrease memory usage. Concerning too less resources: We offer https://hicexplorer.usegalaxy.eu with a limit of 250 GB of HDD space but no RAM or CPU limitations. Feel fr ...
written 12 months ago by wolffj.bioinf10
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Answer: A: Installing and running pyGenomeTracks
... Hi, my apologies for your confusion. I forgot to make HiCMatrix available via pip, our main focus is conda. However, I uploaded HiCMatrix last week. Since version 2.0 of pyGenomeTracks there is no more dependency to HiCExplorer, the dependency is now HiCMatrix. Feel free to ask if you have more ...
written 12 months ago by wolffj.bioinf10

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