User: iqra

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iqra0
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Posts by iqra

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Comment: C: intersectBed Segmentation fault or Received illegal bin number
... I am also facing the same error. kindly tell me how i can solve it ? > bedtools intersect -a SPRINT_identified_all.res.col3 -b wheat_col6.bed -wa -wb > output.bed ERROR: Received illegal bin number 37458 from getBin call. ERROR: Unable to add record to tree. ...
written 9 weeks ago by iqra0
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Comment: A: bedtools coverage gives error received illegal bin number, but that number isn't
... I am facing the same error. kindly guide me how i can i solve it. > bedtools intersect -a SPRINT_identified_all.res.col3 -b wheat_col6.bed -wa -wb > output.bed `ERROR: Received illegal bin number 37458 from getBin call. ERROR: Unable to add record to tree.` ...
written 9 weeks ago by iqra0 • updated 9 weeks ago by RamRS22k
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error in Conversion GFF3 to sequin TBL
... i want to convert the gff3 file into sequin tbl format. i use the script [enter link description here][1] but i found this error .kindly suggest me how to resolved it. please make the changes in script and send me this modified script i am not programmer . ngslab@ngslab-PowerEdge-T440:~/users/f ...
software error R rna-seq snp written 5 months ago by iqra0
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Comment: C: How to download the feature table file of whole genome
... I used the GAG .by runing this command python gag.py -f Triticum_aestivum.fa --gff Triticumgff3.gff3 --out gag_output but the gag_output folder is empty... ...
written 6 months ago by iqra0
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Comment: C: How to download the feature table file of whole genome
... I used the GAG .by runing this command python gag.py -f Triticum_aestivum.fa --gff Triticumgff3.gff3 --out gag_output but the gag_output folder is empty... ...
written 6 months ago by iqra0
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convert the gff3 file from ensembl into 'feature table' (Sequin format/.tbl file).?
... how to convert the gff3 file from ensembl into 'feature table' (Sequin format/.tbl file).? this file is required for redo tool ...
gene R rna-seq snp written 6 months ago by iqra0
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Comment: C: How to download the feature table file of whole genome
... tbl file (feature table file, http://www.ncbi.nlm.nih.gov/projects/Sequin/table.html)[enter link description here][1]. It can be downloaded from NCBI directly. [1]: http://%20http://www.ncbi.nlm.nih.gov/projects/Sequin/table.html ...
written 6 months ago by iqra0
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How to download the feature table file of whole genome
... How to download the feature table file of wheat whole genome which is used in RNA Editing Detection in Organelle (REDO) TOOL ... [enter link description here][1] [1]: https://sourceforge.net/projects/redo/files/ ...
genome next-gen rna-seq snp written 6 months ago by iqra0 • updated 6 months ago by tdmurphy160
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Comment: C: how many files are generated after sorting of .bam file ?
... samtools 1.7 Using htslib 1.7-2 Copyright (C) 2018 Genome Research Ltd. ...
written 7 months ago by iqra0
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Comment: A: how many files are generated after sorting of .bam file ?
... indexing of .bam file is giving this error . how it would be handle ? samtools index my_sorted.bam [E::hts_idx_push] Region 536938519..536938598 cannot be stored in a bai index. Try using a csi index with min_shift = 14, n_lvls >= 6 samtools index: failed to create index for "my_sort ...
written 7 months ago by iqra0 • updated 7 months ago by finswimmer11k

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