User: iqra

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iqra0
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Posts by iqra

<prev • 8 results • page 1 of 1 • next >
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Comment: C: How to download the feature table file of whole genome
... I used the GAG .by runing this command python gag.py -f Triticum_aestivum.fa --gff Triticumgff3.gff3 --out gag_output but the gag_output folder is empty... ...
written 1 day ago by iqra0
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Comment: C: How to download the feature table file of whole genome
... I used the GAG .by runing this command python gag.py -f Triticum_aestivum.fa --gff Triticumgff3.gff3 --out gag_output but the gag_output folder is empty... ...
written 1 day ago by iqra0
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convert the gff3 file from ensembl into 'feature table' (Sequin format/.tbl file).?
... how to convert the gff3 file from ensembl into 'feature table' (Sequin format/.tbl file).? this file is required for redo tool ...
gene R rna-seq snp written 1 day ago by iqra0
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Comment: C: How to download the feature table file of whole genome
... tbl file (feature table file, http://www.ncbi.nlm.nih.gov/projects/Sequin/table.html)[enter link description here][1]. It can be downloaded from NCBI directly. [1]: http://%20http://www.ncbi.nlm.nih.gov/projects/Sequin/table.html ...
written 6 days ago by iqra0
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How to download the feature table file of whole genome
... How to download the feature table file of wheat whole genome which is used in RNA Editing Detection in Organelle (REDO) TOOL ... [enter link description here][1] [1]: https://sourceforge.net/projects/redo/files/ ...
genome next-gen rna-seq snp written 7 days ago by iqra0 • updated 5 days ago by tdmurphy160
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Comment: C: how many files are generated after sorting of .bam file ?
... samtools 1.7 Using htslib 1.7-2 Copyright (C) 2018 Genome Research Ltd. ...
written 4 weeks ago by iqra0
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Comment: A: how many files are generated after sorting of .bam file ?
... indexing of .bam file is giving this error . how it would be handle ? samtools index my_sorted.bam [E::hts_idx_push] Region 536938519..536938598 cannot be stored in a bai index. Try using a csi index with min_shift = 14, n_lvls >= 6 samtools index: failed to create index for "my_sort ...
written 4 weeks ago by iqra0 • updated 4 weeks ago by finswimmer8.8k
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how many files are generated after sorting of .bam file ?
... I used the following command for the sorting of bam file (samtools sort eg2.bam -o eg2.sorted.bam) size of my sam file was 44.6GB and after conversion into bam it is 35GB. sorting of bam file is producing a large no. of temporary files in MB. ...
alignment rna-seq written 4 weeks ago by iqra0 • updated 4 weeks ago by h.mon22k

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