User: Clément Frainay

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Posts by Clément Frainay

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Answer: A: How to generate KEGG pathway classification chart
... I don't know any tool that directly provides such chart, but that looks like base R plot to me. Maybe people use KEGG mapper tool, like this one : https://www.genome.jp/kegg/tool/map_pathway.html then format the results to be imported in R and use the barplot function https://www.statmethods.net/g ...
written 5 weeks ago by Clément Frainay10
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Comment: C: How to create publication quality figures in vector scale format
... I never used Ligplus or DS visualizer, but if the outputs are bitmaps, like PNG or JPEG, you will have a hard time trying to get a vector graphics from that. Bitmaps are composed of pixels and vector graphics are points coordinates with lines and curves described as mathematical formulas. Inkscape ...
written 5 weeks ago by Clément Frainay10
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Answer: A: Alternative to gene2mesh
... Unfortunately, gene2mesh is still down. If you're interested in mapping genes to disease-related MeSH, [GeneSet2Disease][1] is a good one. [Polysearch2.0][2] also provide some genes-to-MeSH mapping Hope this can help [1]: http://cbdm-01.zdv.uni-mainz.de/~jfontain/cms/?page_id=592%20%22GeneSet2D ...
written 4 months ago by Clément Frainay10

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