User: sana777munquad

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Posts by sana777munquad

<prev • 31 results • page 1 of 4 • next >
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Comment: C: Low expressed genes
... ohk then how to remove low count genes in 90% of samples? ...
written 15 days ago by sana777munquad0
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Low expressed genes
... from one review I found this statement: removing features whose counts are consistently low (for example, removing all features that have a count of less than say 10 in more than 90% of the samples) Can you explain how to remove less count genes in 90% samples in excel??? Anyone please guide me ...
rna-seq written 15 days ago by sana777munquad0 • updated 15 days ago by ATpoint40k
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Comment: C: RNA seq data analysis and building co expression network
... removing features whose counts are consistently low (for example, removing all features that have a count of less than say 10 in more than 90% of the samples) Can you explain how to remove less count genes in 90% samples in excel??? ...
written 15 days ago by sana777munquad0
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Comment: A: DESeq2 for Differential gene expression
... I have count matrix in float format (eg 8.99, 5.98) and prepared metadata also. ...
written 9 weeks ago by sana777munquad0
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Comment: C: DESeq2 for Differential gene expression
... Yes I went many tutorials but after library installation I am unable to import my data in this library ...
written 9 weeks ago by sana777munquad0
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DESeq2 for Differential gene expression
... I have a RNAseq data of RSEM normalized data from UCSC. How can I Import my count data in DESeq2 through tximport. Actually after installing library of tximport, it has itself data and execute how can I import my data. ...
rna-seq written 9 weeks ago by sana777munquad0
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DESeq2 for Differential gene expression
... Hii, currently I am working on differential gene expression and using DESeq2 package but during execution I got error that expression values should be integer and my expression values in float form. How can I resolve this issue. ...
differential gene expression written 3 months ago by sana777munquad0 • updated 3 months ago by Shalu Jhanwar470
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Normalization of gene expression data
... I have downloaded the Gene-centric RMA-normalized mRNA expression data. from CCLE website. Can I further transformed by log2 method and Normalized by z score method? ...
rma gene expression written 5 months ago by sana777munquad0
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Drug response prediction
... hii, I am working on prediction of drug response using gene expression data got from CCLE and got 265 Drug data from Genomics of Drug Sensitivity in Cancer (GDSC) but how can I select the drugs for my prediction approach. can anyone help me. ...
drug-response cell line' written 5 months ago by sana777munquad0
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(Closed) Questions regarding outliers
... I downloaded .cel file of geo datasets and normalized it by rma method. Can I remove outliers after normalisation? ...
rna-seq written 9 months ago by sana777munquad0

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