User: Flávia Rogério

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Posts by Flávia Rogério

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How to get the number of segregating sites from a multiple alignment?
... Hi everyone! I'm struggling to get the number of segregating sites (S) in a large contig in a fasta format (1.3Mb) with multiple sequences. I've used muscle aligner to get this alignment, and now I need the number, and % of segregating sites across all sequences from my contig. I didn't find info ...
sequence alignment sequencing written 11 days ago by Flávia Rogério0 • updated 10 days ago by RamRS30k
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Comment: A: GATK DP filter for multiple samples
... I have exactly the same question about DP filter. Did you find some way to filter it? ...
written 22 months ago by Flávia Rogério0

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