User: mackie

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mackie0
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Posts by mackie

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Comment: C: Custom Database Has Spaces
... Yes, I tried typing in a list of 10 or so different options for 6 and it wasn't working. However, I played around with it yesterday with a sub-sample of sequences and it seemed to give the entire header if I used blastall and called blastn, rather than just running blastn... Not sure why the normal ...
written 3 months ago by mackie0
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Comment: C: Custom Database Has Spaces
... Yes, sorry I am referring to a custom BLAST database and I have tried many different outfmt parameters to get the entire title of each sequence in the database, however nothing is working. It could be something completely different than spaces in the database headers, but this is what I am guessing ...
written 3 months ago by mackie0 • updated 3 months ago by RamRS20k
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Comment: C: Custom Database Has Spaces
... Hi, I have tried that but everything that came up was just removing spaces from a sentence, and not altering an NGS database ...
written 3 months ago by mackie0
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Custom Database Has Spaces
... Hi everyone, I am relatively new to DNA sequencing data and have a quick question. I have sequencing data and a custom database that was developed for a previous project in my lab. I have successfully ran split_libraries, and sorted out all of the good reads from my NGS run, however when I BLAST th ...
ngs linux blast qiime written 3 months ago by mackie0

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