User: cdsouthan

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cdsouthan1.8k
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Principle Consultant at TW2Informatics  https://sites.google.com/view/tw2informatics/home

Posts by cdsouthan

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Synonym expansion for PubMed search
... I have this exhaustive synonym set in MyNCBI but I can't remember how I sourced it. Can anyone point me to where I may have got it from? Search "BACE1"[TIAB] OR "BACE-1"[TIAB] OR "BACE 1"[TIAB] OR "Asp 2"[TIAB] OR "ASP2"[TIAB] OR "ASP-2"[TIAB] OR "ASP 2"[TIAB] OR "Aspartyl protease 2"[TIAB] OR "B ...
gene names written 7 weeks ago by cdsouthan1.8k
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Forum: Whither my badges?
... I was gratified to have received a few of these over the years but I can't find them. Have they been deprecated? ...
forum badges written 6 months ago by cdsouthan1.8k • updated 6 months ago by Devon Ryan92k
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Answer: A: Who curates the RIFs into RefSeqs?
... Thanks, I guessed as much but does anyone have even rough overall stats of that three-way split? ...
written 12 months ago by cdsouthan1.8k
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Who curates the RIFs into RefSeqs?
... As most of us know GeneRIF allow scientists to add to the functional annotation of genes described in Gene (i.e. RefSeq also) Are most of these actually submitted by authors or do the NCBI Biocurators also push these in themselves when checking the literature for which Pubs to link to genes? ...
refseq pubmed written 12 months ago by cdsouthan1.8k
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Comment: A: Human protein and gene name overlap
... Apols if I miscommunicated. Names are particularly important for the Guide to Pharmacology because we have to grapple with and curate three different sets of target names from Swiss-Prot, HGNC and the IUPHAR Nomenclature Committee (NC-IUPHAR). We use Symbols of course and collaborate with HGNC but ...
written 12 months ago by cdsouthan1.8k
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Human protein and gene name overlap
... As we know Swiss-Prot Recommended protein names and HGNC Approved gene names can be different for the same protein. The question is exactly how many are different? On the admittedly crude basis of exact text string matches on download lists from both sides the overlap is only 91! However, this ...
hgnc swiss-prot written 12 months ago by cdsouthan1.8k
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Answer: A: 12th International Conference on Advancements in Bioinformatics and Drug Discove
... Take my word for it this is not an authentic conference but they will gladly take your registration cash for what will be a rip-off. The giveaway signs are too numerous to mention but a) this is a fake Biostar user that has only posted this conference, b) the announcement above is hyperbolic broke ...
written 13 months ago by cdsouthan1.8k
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Comment: C: 12th International Conference on Advancements in Bioinformatics and Drug Discove
... This has the hallmarks of a predatory conference, beware ...
written 18 months ago by cdsouthan1.8k
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Answer: A: Fold recognition application
... Don't bother, try Phyre https://cdsouthan.blogspot.se/2018/03/playing-with-phyre.html (DOInt I'm on the SAB) ...
written 19 months ago by cdsouthan1.8k
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New GenBank accessions > PMIDs
... From the ∼3500 author-submitted GenBank accessions per-day does anyone know roughly how many Pubmed IDs this (would) translate to (per-day)? ...
genbank written 19 months ago by cdsouthan1.8k

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Popular Question 6 months ago, created a question with more than 1,000 views. For PDB and MMDB differences in ligand structure
Popular Question 11 months ago, created a question with more than 1,000 views. For C: Converting Affymetrix Probes To Gene Ids
Popular Question 11 months ago, created a question with more than 1,000 views. For PDB and MMDB differences in ligand structure
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Popular Question 17 months ago, created a question with more than 1,000 views. For C: Converting Affymetrix Probes To Gene Ids
Popular Question 17 months ago, created a question with more than 1,000 views. For Uniprot Ids To Go Pie Chart (And Interpro)
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Popular Question 2.0 years ago, created a question with more than 1,000 views. For Uniprot Ids To Go Pie Chart (And Interpro)
Popular Question 2.0 years ago, created a question with more than 1,000 views. For C: Converting Affymetrix Probes To Gene Ids
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Popular Question 4.0 years ago, created a question with more than 1,000 views. For Uniprot Ids To Go Pie Chart (And Interpro)
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