User: cdsouthan

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cdsouthan1.8k
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Curator at Guide to PHARMACOLOGY database  See http://www.linkedin.com/in/cdsouthan

Posts by cdsouthan

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Answer: A: Who curates the RIFs into RefSeqs?
... Thanks, I guessed as much but does anyone have even rough overall stats of that three-way split? ...
written 10 weeks ago by cdsouthan1.8k
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Who curates the RIFs into RefSeqs?
... As most of us know GeneRIF allow scientists to add to the functional annotation of genes described in Gene (i.e. RefSeq also) Are most of these actually submitted by authors or do the NCBI Biocurators also push these in themselves when checking the literature for which Pubs to link to genes? ...
refseq pubmed written 10 weeks ago by cdsouthan1.8k
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Comment: A: Human protein and gene name overlap
... Apols if I miscommunicated. Names are particularly important for the Guide to Pharmacology because we have to grapple with and curate three different sets of target names from Swiss-Prot, HGNC and the IUPHAR Nomenclature Committee (NC-IUPHAR). We use Symbols of course and collaborate with HGNC but ...
written 11 weeks ago by cdsouthan1.8k
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Human protein and gene name overlap
... As we know Swiss-Prot Recommended protein names and HGNC Approved gene names can be different for the same protein. The question is exactly how many are different? On the admittedly crude basis of exact text string matches on download lists from both sides the overlap is only 91! However, this ...
hgnc swiss-prot written 11 weeks ago by cdsouthan1.8k
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Answer: A: 12th International Conference on Advancements in Bioinformatics and Drug Discove
... Take my word for it this is not an authentic conference but they will gladly take your registration cash for what will be a rip-off. The giveaway signs are too numerous to mention but a) this is a fake Biostar user that has only posted this conference, b) the announcement above is hyperbolic broke ...
written 3 months ago by cdsouthan1.8k
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Comment: C: 12th International Conference on Advancements in Bioinformatics and Drug Discove
... This has the hallmarks of a predatory conference, beware ...
written 8 months ago by cdsouthan1.8k
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Answer: A: Fold recognition application
... Don't bother, try Phyre https://cdsouthan.blogspot.se/2018/03/playing-with-phyre.html (DOInt I'm on the SAB) ...
written 9 months ago by cdsouthan1.8k
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New GenBank accessions > PMIDs
... From the ∼3500 author-submitted GenBank accessions per-day does anyone know roughly how many Pubmed IDs this (would) translate to (per-day)? ...
genbank written 9 months ago by cdsouthan1.8k
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Comment: C: Best way to deal with numerous synonyms when converting between drug identifiers
... I (and others I'm sure) would be very interested to hear how you get on with this. AWAK one of the problems is there is no usable definition of common name (although synonym PubMed counts could do as a rough proxy) ...
written 9 months ago by cdsouthan1.8k
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Swiss-Prot excision peptides
... Has anyone already generated the set of FASTA peptides as PTM excision products with potential bioactivity from all human precursor proteins? We'd like to compare these to the bioactive human endogenous peptides we have curated over the years in the Guide to Pharmacology e.g. http://www.guidetop ...
peptides precursors swiss-prot written 9 months ago by cdsouthan1.8k

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Popular Question 10 weeks ago, created a question with more than 1,000 views. For PDB and MMDB differences in ligand structure
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