User: cdsouthan
cdsouthan • 1.8k
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Curator at Guide to PHARMACOLOGY database See http://www.linkedin.com/in/cdsouthan
Posts by cdsouthan
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... This has the hallmarks of a predatory conference, beware ...
written 7 weeks ago by
cdsouthan • 1.8k
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Answer:
A: Fold recognition application
... Don't bother, try Phyre https://cdsouthan.blogspot.se/2018/03/playing-with-phyre.html
(DOInt I'm on the SAB) ...
written 8 weeks ago by
cdsouthan • 1.8k
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... From the ∼3500 author-submitted GenBank accessions per-day does anyone know roughly how many Pubmed IDs this (would) translate to (per-day)? ...
written 8 weeks ago by
cdsouthan • 1.8k
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... I (and others I'm sure) would be very interested to hear how you get on with this. AWAK one of the problems is there is no usable definition of common name (although synonym PubMed counts could do as a rough proxy) ...
written 9 weeks ago by
cdsouthan • 1.8k
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... Has anyone already generated the set of FASTA peptides as PTM excision products with potential bioactivity from all human precursor proteins?
We'd like to compare these to the bioactive human endogenous peptides we have curated over the years in the Guide to Pharmacology e.g. http://www.guidetop ...
written 12 weeks ago by
cdsouthan • 1.8k
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Comment:
C: Finding Human DUFs
... Thanks, but JFTR these are just TrEMBL bits and bobs ...
written 3 months ago by
cdsouthan • 1.8k
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C: Finding Human DUFs
... Thanks a lot, actually this ran - annotation:(type:"positional domain" duf) AND reviewed:yes AND organism:"Homo sapiens (Human) [9606]"
Only gave 7 results but was not expecting much. Simple, when you know how :) ...
written 3 months ago by
cdsouthan • 1.8k
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Comment:
C: Finding Human DUFs
... Where does this run please? Uniprot interface says bad syntax and I cant see those selects in the options ...
written 3 months ago by
cdsouthan • 1.8k
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... Why do you want to do this ? (as a friendly question) ...
written 3 months ago by
cdsouthan • 1.8k
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... As as an exercise for evaluating Phyre I wanted to look at human proteins with neither obvious structure nor established function. Now Pfam does have DUFs (domains of unknown function) nested in this data sheet in fact http://pfam.xfam.org/family/browse?browse=d. However, in the UniProt interfa ...
written 3 months ago by
cdsouthan • 1.8k
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