User: cdsouthan

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cdsouthan1.8k
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Curator at Guide to PHARMACOLOGY database  See http://www.linkedin.com/in/cdsouthan

Posts by cdsouthan

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Comment: C: 12th International Conference on Advancements in Bioinformatics and Drug Discove
... This has the hallmarks of a predatory conference, beware ...
written 7 weeks ago by cdsouthan1.8k
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Answer: A: Fold recognition application
... Don't bother, try Phyre https://cdsouthan.blogspot.se/2018/03/playing-with-phyre.html (DOInt I'm on the SAB) ...
written 8 weeks ago by cdsouthan1.8k
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New GenBank accessions > PMIDs
... From the ∼3500 author-submitted GenBank accessions per-day does anyone know roughly how many Pubmed IDs this (would) translate to (per-day)? ...
genbank written 8 weeks ago by cdsouthan1.8k
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Comment: C: Best way to deal with numerous synonyms when converting between drug identifiers
... I (and others I'm sure) would be very interested to hear how you get on with this. AWAK one of the problems is there is no usable definition of common name (although synonym PubMed counts could do as a rough proxy) ...
written 9 weeks ago by cdsouthan1.8k
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Swiss-Prot excision peptides
... Has anyone already generated the set of FASTA peptides as PTM excision products with potential bioactivity from all human precursor proteins? We'd like to compare these to the bioactive human endogenous peptides we have curated over the years in the Guide to Pharmacology e.g. http://www.guidetop ...
peptides precursors swiss-prot written 12 weeks ago by cdsouthan1.8k
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Comment: C: Finding Human DUFs
... Thanks, but JFTR these are just TrEMBL bits and bobs ...
written 3 months ago by cdsouthan1.8k
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Comment: C: Finding Human DUFs
... Thanks a lot, actually this ran - annotation:(type:"positional domain" duf) AND reviewed:yes AND organism:"Homo sapiens (Human) [9606]" Only gave 7 results but was not expecting much. Simple, when you know how :) ...
written 3 months ago by cdsouthan1.8k
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Comment: C: Finding Human DUFs
... Where does this run please? Uniprot interface says bad syntax and I cant see those selects in the options ...
written 3 months ago by cdsouthan1.8k
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Comment: C: How can I find full formula of the ligand in PDB files?
... Why do you want to do this ? (as a friendly question) ...
written 3 months ago by cdsouthan1.8k
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Finding Human DUFs
... As as an exercise for evaluating Phyre I wanted to look at human proteins with neither obvious structure nor established function. Now Pfam does have DUFs (domains of unknown function) nested in this data sheet in fact http://pfam.xfam.org/family/browse?browse=d. However, in the UniProt interfa ...
protein domains of unkown fuction pfam written 3 months ago by cdsouthan1.8k

Latest awards to cdsouthan

Popular Question 3 months ago, created a question with more than 1,000 views. For PDB and MMDB differences in ligand structure
Popular Question 3 months ago, created a question with more than 1,000 views. For PDB and MMDB differences in ligand structure
Popular Question 7 months ago, created a question with more than 1,000 views. For PDB and MMDB differences in ligand structure
Popular Question 7 months ago, created a question with more than 1,000 views. For C: Converting Affymetrix Probes To Gene Ids
Popular Question 7 months ago, created a question with more than 1,000 views. For Uniprot Ids To Go Pie Chart (And Interpro)
Popular Question 12 months ago, created a question with more than 1,000 views. For Uniprot Ids To Go Pie Chart (And Interpro)
Popular Question 14 months ago, created a question with more than 1,000 views. For Swiss-Prot Peptide Extraction
Popular Question 14 months ago, created a question with more than 1,000 views. For Uniprot Ids To Go Pie Chart (And Interpro)
Teacher 19 months ago, created an answer with at least 3 up-votes. For A: Where/How To Assess Which Bioinformatics Tools/Databases Are Most Used/Accessed?
Popular Question 21 months ago, created a question with more than 1,000 views. For Hgnc To Uniprot
Popular Question 23 months ago, created a question with more than 1,000 views. For Hgnc To Uniprot
Popular Question 23 months ago, created a question with more than 1,000 views. For Searching For Proteins In The New Oyster Genome
Teacher 2.3 years ago, created an answer with at least 3 up-votes. For A: Where/How To Assess Which Bioinformatics Tools/Databases Are Most Used/Accessed?
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: Where/How To Assess Which Bioinformatics Tools/Databases Are Most Used/Accessed?
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Uniprot Ids To Go Pie Chart (And Interpro)
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Hgnc To Uniprot
Scholar 2.9 years ago, created an answer that has been accepted. For A: Identify enzymes among a list of Uniprot ACs
Teacher 2.9 years ago, created an answer with at least 3 up-votes. For A: Where/How To Assess Which Bioinformatics Tools/Databases Are Most Used/Accessed?
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: Where/How To Assess Which Bioinformatics Tools/Databases Are Most Used/Accessed?
Scholar 3.0 years ago, created an answer that has been accepted. For A: Identify enzymes among a list of Uniprot ACs
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: Where/How To Assess Which Bioinformatics Tools/Databases Are Most Used/Accessed?
Popular Question 3.3 years ago, created a question with more than 1,000 views. For Searching For Proteins In The New Oyster Genome
Student 3.3 years ago, asked a question with at least 3 up-votes. For Is Anyone Still Curating Wikigenes Or Is Genewiki Now The Community Choice?
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: Where/How To Assess Which Bioinformatics Tools/Databases Are Most Used/Accessed?

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