User: sabaghianamir70

Reputation:
10
Status:
New User
Location:
iran
Last seen:
2 days ago
Joined:
8 months, 4 weeks ago
Email:
s**************@gmail.com

Phd student in molecular medicine

Posts by sabaghianamir70

<prev • 36 results • page 1 of 4 • next >
1
vote
0
answers
64
views
0
answers
Differential expression of miRNAs
... Hi, I Did a differential expression with the result of `MiRDeep2` Mapper process and map reads to a reference genome in galaxy, with salmon and then use `Deseq2` for DEG. is this workflow OK ? or im making mistake in calculation. if there is better way can you guys tell me about it. P.s i didnt get ...
rna-seq mirna written 3 days ago by sabaghianamir7010 • updated 3 days ago by ATpoint22k
1
vote
0
answers
76
views
0
answers
RNA Sequencing School
... Hi everyone Does anyone know about a valid facility for Courses to learning more RNA sequencing analysis as winter school or some thing like that ? I know this is not a scientific question but i really need some answers from the experts. Thanks ...
rna-seq written 7 days ago by sabaghianamir7010
0
votes
1
answer
103
views
1
answers
Comment: C: Using Chromosome conformation capture Data for DEG in circadian gene
... i know ,your right, but take a look to this SRR file . then you see whats im talking about... SRR3474262 ...
written 5 weeks ago by sabaghianamir7010
0
votes
1
answer
103
views
1
answer
Using Chromosome conformation capture Data for DEG in circadian gene
... Hey Guys I want to get count from a circadian gene which is PER4. it is PER3s pseudogene. So i used Salmon and ive got Per3 not per4 Counts. But i saw some data in same paper which the name was Chromosome conformation capture(Hi-C) which has Counts in per4. So is this right to do DEG on Hi-C inst ...
rna-seq written 5 weeks ago by sabaghianamir7010
1
vote
0
answers
117
views
0
answers
DEG tool for just 2 pair end data
... Hi every one I doing a friend a favor about his project, He has only 2 dataset, one of them is control and one is treat, those are pair end data and he does not had the budget to send more sample for rna sequencing. So anyway i did align those data and finally i cant find any tool for differentia ...
deseq2 limma rna-seq edger written 7 weeks ago by sabaghianamir7010 • updated 7 weeks ago by RamRS24k
0
votes
1
answer
184
views
1
answers
Comment: C: How can get very low counts in RNA-seq ?
... since i working in galaxy plat form . working with galaxy is a little confusing and different from other tools i used. because it using data without needing to aligner. what the exact steps of Salmon ? i mean after trimming. we use salmon and featureCounts? i dont know what workflow should i use ...
written 3 months ago by sabaghianamir7010
0
votes
1
answer
184
views
1
answers
Comment: C: How can get very low counts in RNA-seq ?
... i know these two are similar. but im make my point more clear this time. thank you anyway ...
written 3 months ago by sabaghianamir7010
2
votes
1
answer
184
views
1
answer
How can get very low counts in RNA-seq ?
... Hi every one. i did rna seq analysis. in PER3 gene and PER4 pseudogene i didnt get any counts, but in IGV i saw some small peaks which means they have some counts, even very low, but still they have !!. i want to know is there any way i can get any counts from that ? were my options in my aligner w ...
rna-seq igv written 3 months ago by sabaghianamir7010 • updated 3 months ago by swbarnes26.5k
0
votes
1
answer
240
views
1
answers
Comment: C: how can i download human ribosomal reference ?
... thank you my friend <3 ...
written 3 months ago by sabaghianamir7010
0
votes
0
answers
122
views
0
answers
time Course RNa-seq data from peripheral blood
... hi every one i was looking for a rnaseq data, which has a time seris for example 0-24 hour or longer. i searched my self a find a few. but i asking to if anyone know any paper which can help me. ...
blood time course rna-seq written 3 months ago by sabaghianamir7010

Latest awards to sabaghianamir70

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1152 users visited in the last hour