User: GTR
GTR • 0
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3
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... I found raw variant calls for individuals in high coverage data (30X) which I found right here:
ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/data_collections/1000G_2504_high_coverage/working/20190425_NYGC_GATK/raw_calls/
Where could I find either the BAM/CRAM files used or population VCFs?
Thank you. ...
written 4 months ago by
GTR • 0
• updated
4 months ago by
finswimmer ♦ 13k
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... Hi everyone,
I wanted to see the effect of coverage on the assembly quality to see at which point there is a diminishing return. I am using paired-end reads only (101x2 with 520 insert size), no mate pairs or long reads. Normally a higher coverage is supposed to increase NGA50, but instead, the con ...
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