User: macadamopetrus

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Posts by macadamopetrus

<prev • 23 results • page 1 of 3 • next >
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Comment: C: How to back translate the protein into amino acids sequence with python?
... Sorry for late reply. I just had a lot of work. Back translation was one of the questions in my project. For this back translation: We made a dictionary of the possible translations and added a limit to it. Let's say you can add 10, 20.... possibilities. And then this was used to count the nucleo ...
written 10 months ago by macadamopetrus0
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Comment: C: How to back translate the protein into amino acids sequence with python?
... No, I am not going to use his code I wrote my own. What I do is break down the code to understand it. This is what we wrote. codons_ = [CODONS[codon] for codon in record.seq] + [CODONS['Stop']] data[record.id] = ["".join(result) for result in itertools.islice(itertools.product(*codons_, rep ...
written 10 months ago by macadamopetrus0
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Comment: C: How to back translate the protein into amino acids sequence with python?
... Thank you, We are doing a project for python and trying to make some codes. ...
written 10 months ago by macadamopetrus0
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Comment: C: How to back translate the protein into amino acids sequence with python?
... And I tried it with itertool as well, its much faster and print out the possible results very fast. ...
written 10 months ago by macadamopetrus0
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Comment: C: How to back translate the protein into amino acids sequence with python?
... Can this code work for longer protein sequences? And how can I add some code that will only print out, lets say 3 rna sequences and not all of them. ...
written 10 months ago by macadamopetrus0
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Comment: C: How to back translate the protein into amino acids sequence with python?
... I know it takes a lot of time to run these sequences. That's why I might add some code to print only 3 translations of each protein. But still translate all and print only lets say 3. ...
written 10 months ago by macadamopetrus0
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Comment: C: How to back translate the protein into amino acids sequence with python?
... Sorry, I tried to put the code inside the code kernel but this doesn't work. ...
written 10 months ago by macadamopetrus0
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Comment: C: How to back translate the protein into amino acids sequence with python?
... ok My mock protein are in fasta file called HIJ2. fasta. Protein sequences are MPG and MPPP. amino_x = { 'M': ['GCU', 'GCC', 'GCA'], 'P': ['UGU','UGC'], 'G': ['AAA'] } from Bio import SeqIO for protein in SeqIO.parse("HIJ2.fasta","fasta") ...
written 10 months ago by macadamopetrus0 • updated 10 months ago by genomax74k
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How to back translate the protein into amino acids sequence with python?
... Dear all, I am trying to translate protein back into RNA sequences. And when doing so, this kind of back translation gives a lot of RNA sequences. So for that, I wrote a dictionary of all the possibilities present. And then trying to back translate it with python. But the first problem is I don't ...
python protein sequence rna-seq written 10 months ago by macadamopetrus0
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(Closed) How to multiply all the elements of the list together?
... Dear all, I wrote a code to multiply all the elements from the lists. It goes something like this: for i in list(combinations): new_value = list() result = 1 for answers in list(combinations): result = result * answers return result print(ne ...
python for loops written 10 months ago by macadamopetrus0

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