User: zion22

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zion2240
Reputation:
40
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New User
Location:
merilla
Last seen:
2 months, 3 weeks ago
Joined:
11 months, 1 week ago
Email:
c******@gmail.com

Posts by zion22

<prev • 21 results • page 2 of 3 • next >
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I can not run bcftools stats (help)
... Hi I would like to make statistics from vcf.gz files using bcftools stats, but when I try to run the following script, it generates files without weight my script is this: > bcftools stats -F "My_reference_genome.fasta" -s "My_vcf.gz_file.vcf.gz" > "/T1_.vcf.stats" Immediately ran the ...
genome written 9 months ago by zion2240
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Comment: C: how i can separate mitochondrial sequences from chromosomal sequences
... ahh, sorry, I have my raw reads, also I already assembled them, so I think, I would work with the contigs or would have to work with the reads? the mitogenome reference file comes from the NCBI ...
written 9 months ago by zion2240
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Comment: C: how i can separate mitochondrial sequences from chromosomal sequences
... can i do that from a contigs.fasta file? ...
written 9 months ago by zion2240
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Comment: C: How remove gaps from gff file?
... hi, scaffold_1 JGI exon 3645 3780 . - . name "estExt_Genewise1.C_10001"; transcriptId 643699 scaffold_1 JGI CDS 3673 3780 . - 0 name "estExt_Genewise1.C_10001"; proteinId 643589; exonNumber 9 scaffold_1 JGI ...
written 10 months ago by zion2240 • updated 10 months ago by genomax75k
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Comment: C: How remove gaps from gff file?
... like "*", "-", " ", "*" or "?" ...
written 10 months ago by zion2240
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Problem training Augustus (prediction genes)
... Hello Thank you so much for reading this post, I'd like to come to you for help. I have tried to train augustus (following the tutorial described in: http://computationalgenomicsiicb.blogspot.com/2015/07/using-scipio-for-generating-training.html), but when I executed the script "*etraining*": ...
genome gene software error written 10 months ago by zion2240
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Comment: C: help to extract data
... Sorry to bother you so much. This was the result. **R1_001.fastq.gz:** @M03377:2:000000000-AJN1Y:1:1101:20555:1382 1:N:0:0 TTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTCTTTTTCTCTTTTTTTTTTCTCTTTTCTTCTTTCTTTTCTCTTTCTTCTTCTTTTCCTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTCTTTTTTCTTTCTTTCTTTTTTTTCTTTTTTTTCTT ...
written 11 months ago by zion2240 • updated 11 months ago by genomax75k
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Comment: C: help to extract data
... that was the result: `0: 5821378` ...
written 11 months ago by zion2240
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Comment: C: help to extract data
... sorry, where can you find this file? ...
written 11 months ago by zion2240
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Answer: A: help to extract data
... Hi. Thank you so much for helping me. I executed the command as you told me, which was next: demuxbyname.sh in1=/info/Samples/cdv/R1_001.fastq.gz in2=/info/Samples/cdv/R2_001.fastq.gz out1=out_%_R1.fq.gz out2=out_%_R2.fq.gz prefixmode=f names=CTCTCTAT+TAAGGCGA,CTCTCTAT+CGTACTAG,CTCTCTAT+AGGCAG ...
written 11 months ago by zion2240

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Student 5 months ago, asked a question with at least 3 up-votes. For how to identify amino acids using snpEFF

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