User: dymphan.17phd

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Posts by dymphan.17phd

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Comment: C: error in rgi tool to detect antibiotic resistance genes
... My input file has protein sequences in fasta format. how can I get a .xml file. I have also added the other options in command line. ...
written 6 months ago by dymphan.17phd0
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error in rgi tool to detect antibiotic resistance genes
... I have used the "rgi" tool to screen for antibiotic resistant genes against CARD database from the sample which are protein sequences using the command line given below. rgi main -i Documents/MG.aa.calls.clean.fa -o Documents/CARD1/rgi/arg-1 -t protein -a DIAMOND -n 4 --low_quality I get the f ...
gene software error next-gen sequence sequencing written 6 months ago by dymphan.17phd0 • updated 6 months ago by genomax87k
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Comment: C: How to generate the svg format from the resutls in krona.html?
... Thank you for the information ...
written 9 months ago by dymphan.17phd0
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How to generate the svg format from the resutls in krona.html?
... I have the html format for [krona][1] plot gnerated. In that there is an option called snapshot which renders the view in SVG format. In firefox it is said to open it in a new window. But when I choose the option the new window just pops up and goes away. How can I download the SVG format of the kro ...
sequencing krona next-gen svg written 9 months ago by dymphan.17phd0 • updated 9 months ago by Pierre Lindenbaum129k
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Comment: C: Creating database in LAST tool with NCBI nt database
... I want to align the nucleotide bases to the database for classification of microbes present. ...
written 9 months ago by dymphan.17phd0
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Comment: C: Creating database in LAST tool with NCBI nt database
... Thank you for the information. ...
written 9 months ago by dymphan.17phd0
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Comment: C: Creating database in LAST tool with NCBI nt database
... These are not indexed. Do these sequences need to be indexed in order to see the results. If so how can it be done. ...
written 9 months ago by dymphan.17phd0
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Comment: C: Creating database in LAST tool with NCBI nt database
... Thank you for the information. ...
written 9 months ago by dymphan.17phd0
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Creating database in LAST tool with NCBI nt database
... I have installed LAST tool to align nanopore reads. lastdb option is used to create database from fasta file for alignment. For metagenomic study, I need to align my nanopore reads to the NCBI nt (nucleotide) or nr (protein) database. How can I make a database for alignment using LAST tool from (NCB ...
alignment next-gen sequence sequencing written 9 months ago by dymphan.17phd0 • updated 9 months ago by genomax87k

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