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2
votes
2
replies
458
views
Looking for a simple tool to match 6-mers (such as TGATCA) to motifs
motif.
updated 19 months ago by 161k • written 19 months ago by ▴ 70
0
votes
0
replies
288
views
Identify each segment and breakpoints in segmental duplication
duplication segmental dotplot
20 months ago by changxu.fan ▴ 70
0
votes
1
reply
769
views
Comment: Comment: homer annotatePeaks.pl: is it possible to adjust the threshold for motif scan?
22 months ago by changxu.fan ▴ 70
1
vote
3
replies
769
views
homer annotatePeaks.pl: is it possible to adjust the threshold for motif scan?
homer
updated 22 months ago by ★ 1.7k • written 22 months ago by ▴ 70
1
vote
0
replies
317
views
An IGV track type to display numerical data and categorical data simultaneously
igv
23 months ago by changxu.fan ▴ 70
0
votes
1
reply
692
views
Comment: Comment: Looking for a tool to test for positive selection in enhancer
2.1 years ago by changxu.fan ▴ 70
0
votes
3
replies
692
views
Looking for a tool to test for positive selection in enhancer
positive selection
updated 2.1 years ago by ▴ 490 • written 2.1 years ago by ▴ 70
0
votes
1
reply
982
views
Comment: Comment: How to interpret the log-likelihood values of phyml results?
2.1 years ago by changxu.fan ▴ 70
3
votes
3
replies
982
views
How to interpret the log-likelihood values of phyml results?
phyml
updated 2.1 years ago by ★ 27k • written 2.1 years ago by ▴ 70
0
votes
0
replies
450
views
Best tools for calling structural variants from 2 assemblies?
genetics variants genomics comparative population evolution
2.6 years ago by changxu.fan ▴ 70
0
votes
0
replies
2.1k
views
Comment: Comment: How to change the track background color of IGV
2.7 years ago by changxu.fan ▴ 70
0
votes
2
replies
2.1k
views
How to change the track background color of IGV
IGV
2.7 years ago by changxu.fan ▴ 70
1
vote
1
reply
845
views
Best current tool for deconvolution of bulk sample
cibersort
updated 2.7 years ago by ▴ 220 • written 2.7 years ago by ▴ 70
0
votes
0
replies
385
views
Looking for a table of gene expression from Encode RNA-seq experiments
encode
2.9 years ago by changxu.fan ▴ 70
0
votes
2
replies
2.0k
views
how to get total number of reads in a IGV view
igv
updated 3.0 years ago by 141k • written 3.0 years ago by ▴ 70
0
votes
0
replies
2.1k
views
Comment: C: How to use Rsamtools to extracting reads map into single chromosome from BAM fil
3.1 years ago by changxu.fan ▴ 70
16
votes
14
replies
6.6k
views
How to change cellranger multimapping algorithm
RNA-Seq
updated 3.3 years ago by ★ 1.9k • written 5.3 years ago by ▴ 70
0
votes
0
replies
595
views
Looking for a fast way to visualize the same region of many Hi-C datasets together
Hi-C juicer juicebox
3.5 years ago by changxu.fan ▴ 70
0
votes
0
replies
548
views
The best pacakge to annotate a set of regions
annotate R cage
3.5 years ago by changxu.fan ▴ 70
2
votes
1
reply
1.1k
views
recommendation needed: scRNA-seq batch effect correction methods that can be used for differential expression
single-cell RNA-Seq batch-effect
updated 17 days ago by 43k • written 3.7 years ago by ▴ 70
2
votes
1
reply
812
views
Looking for an annotation-aware sequence alignment visualization tool
alignment genome jalview
updated 3.7 years ago by ▴ 220 • written 3.7 years ago by ▴ 70
0
votes
1
reply
727
views
How to customize the attibutes of geo datasets?
ncbi geo
updated 4.3 years ago by ▴ 40 • written 4.3 years ago by ▴ 70
0
votes
0
replies
6.6k
views
Comment: C: How to change cellranger multimapping algorithm
5.2 years ago by changxu.fan ▴ 70
0
votes
1
reply
6.6k
views
Comment: C: How to change cellranger multimapping algorithm
5.2 years ago by changxu.fan ▴ 70
0
votes
1
reply
6.6k
views
Comment: C: How to change cellranger multimapping algorithm
5.2 years ago by changxu.fan ▴ 70
2
votes
0
replies
6.6k
views
Comment: C: How to change cellranger multimapping algorithm
5.3 years ago by changxu.fan ▴ 70
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