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2
votes
2
replies
554
views
Looking for a simple tool to match 6-mers (such as TGATCA) to motifs
motif.
updated 2.2 years ago by 164k • written 2.2 years ago by ▴ 70
0
votes
0
replies
373
views
Identify each segment and breakpoints in segmental duplication
duplication segmental dotplot
2.3 years ago by changxu.fan ▴ 70
1
vote
3
replies
911
views
homer annotatePeaks.pl: is it possible to adjust the threshold for motif scan?
homer
updated 2.5 years ago by ★ 1.8k • written 2.5 years ago by ▴ 70
1
vote
0
replies
374
views
An IGV track type to display numerical data and categorical data simultaneously
igv
2.6 years ago by changxu.fan ▴ 70
0
votes
3
replies
844
views
Looking for a tool to test for positive selection in enhancer
positive selection
updated 2.7 years ago by ▴ 550 • written 2.7 years ago by ▴ 70
3
votes
3
replies
1.5k
views
How to interpret the log-likelihood values of phyml results?
phyml
updated 2.7 years ago by ★ 28k • written 2.7 years ago by ▴ 70
0
votes
0
replies
524
views
Best tools for calling structural variants from 2 assemblies?
genetics variants genomics comparative population evolution
3.2 years ago by changxu.fan ▴ 70
0
votes
2
replies
2.4k
views
How to change the track background color of IGV
IGV
3.3 years ago by changxu.fan ▴ 70
1
vote
1
reply
948
views
Best current tool for deconvolution of bulk sample
cibersort
updated 3.3 years ago by ▴ 250 • written 3.4 years ago by ▴ 70
0
votes
0
replies
446
views
Looking for a table of gene expression from Encode RNA-seq experiments
encode
3.5 years ago by changxu.fan ▴ 70
0
votes
2
replies
2.4k
views
how to get total number of reads in a IGV view
igv
updated 3.6 years ago by 147k • written 3.6 years ago by ▴ 70
16
votes
14
replies
7.3k
views
How to change cellranger multimapping algorithm
RNA-Seq
updated 3.9 years ago by ★ 2.1k • written 5.9 years ago by ▴ 70
0
votes
0
replies
650
views
Looking for a fast way to visualize the same region of many Hi-C datasets together
Hi-C juicer juicebox
4.1 years ago by changxu.fan ▴ 70
0
votes
0
replies
603
views
The best pacakge to annotate a set of regions
annotate R cage
4.1 years ago by changxu.fan ▴ 70
2
votes
1
reply
1.2k
views
recommendation needed: scRNA-seq batch effect correction methods that can be used for differential expression
single-cell RNA-Seq batch-effect
updated 7 months ago by 44k • written 4.3 years ago by ▴ 70
2
votes
1
reply
885
views
Looking for an annotation-aware sequence alignment visualization tool
alignment genome jalview
updated 4.3 years ago by ▴ 220 • written 4.3 years ago by ▴ 70
0
votes
1
reply
807
views
How to customize the attibutes of geo datasets?
ncbi geo
updated 4.9 years ago by ▴ 40 • written 4.9 years ago by ▴ 70
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