User: ForrestBear

gravatar for ForrestBear
ForrestBear30
Reputation:
30
Status:
New User
Location:
Curii
Twitter:
forrest_svc
Last seen:
1 month ago
Joined:
5 months, 1 week ago
Email:
f*******@curii.com

Posts by ForrestBear

<prev • 4 results • page 1 of 1 • next >
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Comment: C: Output going to stdout?
... Thanks so much, Mr C! :) ...
written 8 weeks ago by ForrestBear30
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Output going to stdout?
... I'm struggling to represent this syntax with CWL: vcf-sort -c in_file.vcf > out_file.vcf Specifically with routing the outfile, as right now, it looks like this will push to stdout.txt. I'm sure this is simple, but, guidance is appreciated. cwlVersion: v1.0 class: CommandLineTool requir ...
cwl written 8 weeks ago by ForrestBear30 • updated 8 weeks ago by Michael R. Crusoe1.5k
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Comment: C: CWL: nameext not returning expected array
... I did try this and still got empty arrays. I'm wondering if it might be a bug. ...
written 3 months ago by ForrestBear30
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CWL: nameext not returning expected array
... I'm writing an expression tool in CWL to handle getting an array of file names based on extension. In a directory that contains .bed, .vcf.gz, I'd like to return an array of vcf.gz files. It doesn't seem like file.nameext is working as I expect it to. class: ExpressionTool cwlVersion: v1 ...
cwl expressiontool written 3 months ago by ForrestBear30 • updated 3 months ago by Tom250

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