User: manjumoorthy95
manjumoorthy95 • 20
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Posts by manjumoorthy95
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... Even in ComplexHeatmap package, when I use the
colorRamp2(c(-3,3,9,15), c(“red”,”yellow”,”green”,”blue”))
The color range is still getting divided in the heatmap automatically to `15,10,5,0,-5`. I basically want to see only the values `(-3,3,9,15)` in the color range bar. ...
written 9 weeks ago by
manjumoorthy95 • 20
• updated
8 weeks ago by
RamRS ♦ 28k
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... The below image shows the type of the heatmap i want. As you can see the color key range in the heatmap is -3,3,9,15. How to achieve the same?
I have tried the `break` argument in the heatmap.2() function. But the color range keeps changing from what ever break i provide. I need the exact numbers i ...
written 9 weeks ago by
manjumoorthy95 • 20
• updated
9 weeks ago by
ATpoint ♦ 36k
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... I have a paired end data with forward read length of 28bp and reverse read of 120bp. Is this some sequencing error? Will this cause error while mapping the paired data to a reference Genome using tools like bwa or bowtie2? ...
written 10 months ago by
manjumoorthy95 • 20
• updated
10 months ago by
Biostar ♦♦ 20
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... In the cummeRbund Package for analysis of CuffDiff data, the `dispersionPlot()` function allows us to know whether over-dispersion has happened with our sample. In the X-axis of the plot is the mean of the count from each samples and on Y-axis the dispersion is shown. Can anyone help me to know whic ...
written 11 months ago by
manjumoorthy95 • 20
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Comment:
C: Phylogenomic tree construction
... ok I will try that way ...
written 14 months ago by
manjumoorthy95 • 20
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378
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Comment:
C: Phylogenomic tree construction
... each strain has around 4.9 mb as the genome size. ...
written 14 months ago by
manjumoorthy95 • 20
0
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1
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378
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1
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Comment:
C: Phylogenomic tree construction
... But i wanted to use the entire genome of 15 strains of bacteria. ...
written 14 months ago by
manjumoorthy95 • 20
2
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1
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378
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1
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... I wanted to construct phylogenomic tree using the whole genome of certain bacterial strains. can anybody help me with suggestions of softwares or webservers to use? ...
written 14 months ago by
manjumoorthy95 • 20
• updated
14 months ago by
piet • 1.8k
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... Can anybody explain to me why do we perform fishers test on results of COG annotation. I have performed the functional annotation of proteins for a bacteria, by using Eggnog (COG Analysis). Is it mandatory to perform p test or fishers test on the results for cog analysis? ...
written 15 months ago by
manjumoorthy95 • 20
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467
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... Ok thank you. Let me try out that way ...
written 15 months ago by
manjumoorthy95 • 20
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