User: Hadi M
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- 1 year, 4 months ago
Posts by Hadi M
Comment: C: Piping BWA MEM to Picard SortSam
... Thank you for your reply. I read GATK recommended picard from this link: https://www.broadinstitute.org/partnerships/education/broade/best-practices-variant-calling-gatk-1 Cheers. ...
... Hi, I am working with limited amount of disk space so I want to know if it possible to pipe BWA MEM to Picard SortSam? If so, what would be the proper command for it? I want to skip the SAM file and directly sort and convert it to BAM. I do aware I can pipe BWA MEM to Samtools Sort but I plan to s ...
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