User: lpragasa

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lpragasa0
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Posts by lpragasa

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Is there a way to obtain taxonomy IDs of organisms with associated protein sequences?
... I want to get a list of taxonomy IDs from a taxonomic group. If I enter the taxon ID (ex. txid4751[Organism]) in taxonomy database in NCBI, there are a lot of entries, some of them don't have associated protein sequences. I would only need the IDs of those organisms with protein sequences. A much as ...
ncbi bioinformatics blast written 3 months ago by lpragasa0 • updated 3 months ago by gb780
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Percent abundance of two separate species in transcriptome data
... Hi. I have RNA seq data of fungal cultures with the goal of comparing gene expression of treated and untreated samples (n=3 each treatment). Upon analysis, it became clear that the initial culture used is cross contaminated (or not purified) and that I am dealing with at least 2 species in my sample ...
metagenomics rna-seq written 4 months ago by lpragasa0 • updated 4 months ago by kristoffer.vittingseerup1.8k

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