User: phylofun

gravatar for phylofun
phylofun30
Reputation:
30
Status:
New User
Location:
Last seen:
2 weeks ago
Joined:
6 months ago
Email:
n***********@sdsu.edu

Posts by phylofun

<prev • 17 results • page 1 of 2 • next >
0
votes
0
answers
160
views
0
answers
Comment: C: root to node distance
... Do you know what function does the tree traversal method in ape? I can't find what I'm looking for in the manual ...
written 29 days ago by phylofun30
0
votes
0
answers
160
views
0
answers
Comment: C: root to node distance
... Thanks! Question, would this do the job? https://www.rdocumentation.org/packages/ape/versions/5.3/topics/branching.times ...
written 29 days ago by phylofun30
0
votes
0
answers
160
views
0
answers
Comment: C: root to node distance
... Any ideas on what R code I could use then? ...
written 4 weeks ago by phylofun30
0
votes
0
answers
160
views
0
answers
Comment: C: root to node distance
... I used a relaxed molecular clock, my tree is ultrametric ...
written 4 weeks ago by phylofun30
0
votes
0
answers
160
views
0
answers
Comment: C: root to node distance
... I’m curious how to do both. Thanks! ...
written 4 weeks ago by phylofun30
2
votes
0
answers
160
views
0
answers
root to node distance
... I want to calculate the relative time from the tree root to the species' creation node for all species in my phylogeny. Is this possible in R? ...
phylogeny written 5 weeks ago by phylofun30
0
votes
1
answer
92
views
1
answer
node height test in R
... How can I perform the node height test (described in Freckleton and Harvey, 2006) in R? ...
R phylogenetics written 6 weeks ago by phylofun30 • updated 6 weeks ago by Jean-Karim Heriche20k
2
votes
1
answer
126
views
1
answer
prunning posterior distribution of trees in R
... I have a posterior distribution of trees from a Bayesian analysis in `nexus` format. Is there a function in R to prune these trees to match my trait dataset? Something like the `treedata` function in the R package *geiger* seems to do what I want, but it does not handle multiple trees. ...
phylogeny R written 8 weeks ago by phylofun30 • updated 6 weeks ago by Klaus S100
0
votes
1
answer
261
views
1
answers
Comment: C: Percent reads mapped in Picard
... I did the alignment with bwa aln and bwa sampe (a long time ago) ...
written 4 months ago by phylofun30
0
votes
1
answer
261
views
1
answers
Comment: C: Percent reads mapped in Picard
... I just used samtools flagstat command and was able to get % reads mapped. However, should I expect to get the same or different result using CollectAlignmentSummaryMetrics? ...
written 4 months ago by phylofun30

Latest awards to phylofun

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 847 users visited in the last hour