User: phylofun

gravatar for phylofun
phylofun50
Reputation:
50
Status:
Trusted
Location:
Last seen:
8 months, 3 weeks ago
Joined:
1 year, 10 months ago
Email:
n***********@sdsu.edu

Posts by phylofun

<prev • 21 results • page 1 of 3 • next >
0
votes
0
answers
271
views
0
answers
prune tree based on node labels in R
... Is there an R package that will prune a tree to a select subclade if I give it a node label? ...
phylogeny R written 8 months ago by phylofun50
0
votes
0
answers
242
views
0
answers
plot phylogenetic tree with two traits at the tips
... I want to plot a phylogenetic tree in a circular fashion with two traits at each tip. The traits are discrete and continuous. Can someone show me how to do this in R? ...
phylogenetics written 9 months ago by phylofun50
3
votes
1
answer
927
views
1
answer
Drop tip from multiPhylo object in R
... I have 100s of phylogenetic trees in a multiPhylo object. There is one tip I need to drop from all of these trees. How can I do this in R? ...
phylogeny R written 15 months ago by phylofun50 • updated 15 months ago by Brice Sarver3.5k
0
votes
1
answer
1.2k
views
1
answer
changing species names in phylogeny in R
... I have a column of species in the order in which they appear in my phylogeny (output from $tip.labels). I want to swap out this list of species with a new species list such that is in the same order as my original species list and replaces all the species in $tip.labels from an R phylo object. ...
R phylogenetics written 15 months ago by phylofun50 • updated 15 months ago by Brice Sarver3.5k
0
votes
0
answers
529
views
0
answers
Comment: C: root to node distance
... Do you know what function does the tree traversal method in ape? I can't find what I'm looking for in the manual ...
written 17 months ago by phylofun50
0
votes
0
answers
529
views
0
answers
Comment: C: root to node distance
... Thanks! Question, would this do the job? https://www.rdocumentation.org/packages/ape/versions/5.3/topics/branching.times ...
written 17 months ago by phylofun50
0
votes
0
answers
529
views
0
answers
Comment: C: root to node distance
... Any ideas on what R code I could use then? ...
written 17 months ago by phylofun50
0
votes
0
answers
529
views
0
answers
Comment: C: root to node distance
... I used a relaxed molecular clock, my tree is ultrametric ...
written 17 months ago by phylofun50
0
votes
0
answers
529
views
0
answers
Comment: C: root to node distance
... I’m curious how to do both. Thanks! ...
written 17 months ago by phylofun50
2
votes
0
answers
529
views
0
answers
root to node distance
... I want to calculate the relative time from the tree root to the species' creation node for all species in my phylogeny. Is this possible in R? ...
phylogeny written 17 months ago by phylofun50

Latest awards to phylofun

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1848 users visited in the last hour