User: jennifer.m.conrad.gr

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Posts by jennifer.m.conrad.gr

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PCA on RNAseq time series data
... Hi All, I am investigating my RNAseq data for batch effects and then attempting to remove them. The data file I am trying to use contains raw counts of gene expression values every two days for 2 days (~55,000 rows and 24 columns each representing a different time-point). The RNAseq experiment ...
gene pca rna-seq written 4 months ago by jennifer.m.conrad.gr0 • updated 4 months ago by swbarnes27.0k
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Comment: C: R error using - BiocManager::install("mygene", version = "3.10"). Help!
... Ok, here is what I got- > BiocManager::install("mygene", version = "3.9") Error: To use Bioconductor version '3.9', first downgrade 26 packages with "BiocManager::install(version = '3.9')" > BiocManager::install(version = '3.9') Downgrade 25 packages to Bioconductor versi ...
written 5 months ago by jennifer.m.conrad.gr0 • updated 5 months ago by Kevin Blighe52k
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R error using - BiocManager::install("mygene", version = "3.10")
... I am trying to install R package '*mygene*' and it is giving me the following error. I am relatively new to R, so any help is appreciated! BiocManager::install("mygene", version = "3.10") Bioconductor version 3.10 (BiocManager 1.30.4), R 3.6.0 (2019-04-26) Installing package(s ...
R bioconductor written 5 months ago by jennifer.m.conrad.gr0 • updated 4 months ago by zx87548.8k
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Converting rsem.gene.results file to .txt or .xslx file
... I have done transcript quantification using RSEM and have data files "*.rsem.genes.results". I am trying to extract the FPKM value out of the file, but the columns can not be separated in the current .results file type, so I'm looking for a way to convert this file type to one which can be manipulat ...
rsem written 10 months ago by jennifer.m.conrad.gr0

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