User: thomasbersez

gravatar for thomasbersez
thomasbersez10
Reputation:
10
Status:
New User
Location:
France INRA
Website:
https://github.com/tbe...
Last seen:
53 minutes ago
Joined:
1 month ago
Email:
t***********@gmail.com

Intern in bioinformatic at INRA (fr). Developing pipelines for allele mining !

Posts by thomasbersez

<prev • 9 results • page 1 of 1 • next >
0
votes
3
answers
89
views
3
answers
Comment: C: Random SNPs simulation?
... Thanks a lot! It works perfectly! Best, Thomas ...
written 6 days ago by thomasbersez10
7
votes
3
answers
89
views
3
answers
Random SNPs simulation?
... Hi everyone, For an allele mining project I need to generate in silico NGS data. I have chosen to use Grinder to do so. I would like to add randomly generated SNPs to my reference genome, is any software available to do that ? Thanks for help! ...
snp written 7 days ago by thomasbersez10 • updated 7 days ago by rainadawan10
0
votes
4
answers
90
views
4
answers
Answer: A: OMA cannot evaluate boolean
... Just an other point, Now I get this error, 1) Mem: 0.017GB (UINT)s=76983683, lostorage=76234752, cond=0 (UINT)s=76983683, historage=157437752, cond=0 strlen(s)=0, s=, s=76983683 strlen(s2)=0, s2=, s2=76983684 Irrecoverable system error gc-14 running Align Aborted (core dumped) wh ...
written 26 days ago by thomasbersez10
0
votes
4
answers
90
views
4
answers
Answer: A: OMA cannot evaluate boolean
... Edit, I have managed to solve the previous error. It was just an error in the `parameters.drw` file ... Sorry for the bothering ^^ ...
written 26 days ago by thomasbersez10
0
votes
4
answers
90
views
4
answers
Answer: A: OMA cannot evaluate boolean
... Hi, Thanks for your quick answer! I get the following message with `OMA -c -d 3`. only_run_dbconv := true # SetRandSeed: SetRand(399990844): Starting database conversion and checks... Process 9707 on pac-1052-998: job nr 1 of 1 Error, (in ConvertGenomes) cannot evaluate boolean ...
written 26 days ago by thomasbersez10
0
votes
4
answers
90
views
4
answers
OMA cannot evaluate boolean
... Hi! I am trying to run OMA standalone on a two proteome test set. All parameters are left to default. I get the following error : OMA -c Starting database conversion and checks... Process 19349 on pac-1052-998: job nr 1 of 1 Error, (in ConvertGenomes) cannot evaluate boolean Any ...
orthologs oma issue bug written 26 days ago by thomasbersez10
0
votes
0
answers
82
views
0
answers
OrthoMLC for plants proteomes?
... Hi! Does someone here have experience with OrthoMLC usage on plant genomes? Any review to recommend? ...
gene orthologs paralogs written 27 days ago by thomasbersez10
0
votes
0
answers
109
views
0
answers
Comment: C: Mapping DNAseq reads on cds ?
... I am developing a pipeline for variant calling on wild relative of cultivated plants. The overall idea is to find cds variants in wild specie. Because wild specie genome isn't always available, I may to map my DNAseq read onto cds of the gene(s) of interest. Thanks for the answer! ...
written 4 weeks ago by thomasbersez10
2
votes
0
answers
109
views
0
answers
Mapping DNAseq reads on cds ?
... It may be a dumb question but, does anyone know a method / tool to map DNAseq reads to cds ? Reads falling in between exon and intro may have to be automatically trimmed. Thanks for help. ...
alignment next-gen written 4 weeks ago by thomasbersez10

Latest awards to thomasbersez

Autobiographer 4 weeks ago, has more than 80 characters in the information field of the user's profile.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2269 users visited in the last hour