User: B- for bioinformatics

Reputation:
20
Status:
New User
Location:
Last seen:
1 month ago
Joined:
1 year, 2 months ago
Email:
g*******@student.gu.se

Bachelor's degree student in molecular biology

Posts by B- for bioinformatics

<prev • 20 results • page 1 of 2 • next >
1
vote
1
answer
70
views
1
answer
how to get/make/find fastq file from cellranger?
... Hi I need to get .fastq files from cellranger (scRNAseq). I have checked folders, could not find fasta r fastq files, expect matrix files, how can I generate fastq with cellranger? ...
rna-seq written 5 weeks ago by B- for bioinformatics 20 • updated 5 weeks ago by genomax80k
2
votes
1
answer
100
views
1
answer
Bulk RNA seq
... Hi I just started indexing with Rsubread with R packages 3.6.0. I would like to know a few things in the scripts. library(Rsubread) ref <- system.file("extdata","reference.fa",package="Rsubread") buildindex(basename="reference_index",reference=ref) 1. What does mean about extdat ...
rna-seq written 6 weeks ago by B- for bioinformatics 20 • updated 6 weeks ago by genomax80k
4
votes
1
answer
193
views
1
answer
What is k_mers ? what it"s really doing in the Genome assembly ?
... Hi all I don"t got the concept of K_mers? what it's really doing in the assembly? ...
assembly next-gen written 5 months ago by B- for bioinformatics 20
0
votes
0
answers
96
views
0
answers
(Closed) genome sequencing ?
... 1. What is the starting material for genome sequencing? 2. Can all the genome DNA needed for all libraries be extracted from one single animal? 3. Which source material should I choose? for example in the case of a small organism, do i have to extract from the whole animal organism ...
0
votes
0
answers
264
views
0
answers
Comment: C: Pipeline for single RNA seq to work with Python
... Hi what did you mean? ...
written 7 months ago by B- for bioinformatics 20
0
votes
0
answers
264
views
0
answers
Which pipeline is better for the pre-processing of the single-cell transcriptomics dataset?
... Hi I have planned to analyze some scRNA seq dataset. The first will do pre-processing in Seurat, thereafter shift into Scanpy Does it recommendable? or there are any alternative ways? ...
rna-seq written 7 months ago by B- for bioinformatics 20
0
votes
1
answer
195
views
1
answer
How can I install numpy by avoiding following error?
... $:~/Documents/pythonWithPyham/Machine_learning/Randomforest/proposals$ pip install numpy bash: /home/.local/bin/pip: /usr/bin/python3: bad interpreter: No such file or directory ...
linux written 7 months ago by B- for bioinformatics 20 • updated 7 months ago by Carambakaracho2.0k
1
vote
1
answer
238
views
1
answer
cowplot-getting some error,how can I fix it ?
... hi When I run the `library(cowplot)`, getting some error. what does it mean? please check error below Note: As of version 1.0.0, cowplot does not change the default ggplot2 theme anymore. To recover the previous *behavior, execute: theme_set(theme_cowplot()) ...
R written 8 months ago by B- for bioinformatics 20 • updated 8 months ago by zx87549.1k
9
votes
2
answers
448
views
2
answers
Bioinformatics grant application links
... Hi Some could share publically available bioinformatics grant application links? ...
next-gen rna-seq written 11 months ago by B- for bioinformatics 20 • updated 11 months ago by Jeremy Leipzig19k
0
votes
0
answers
325
views
0
answers
Comment: C: I have to run all the sample with a single run
... fastqc, Trim_galore, kmergenie, assemblers (velveth and velvetg), mapping(BWA) and igv. Just a laptop (1.4TB free space and 16gb RAM) Yes, I did. I am going through it...... ...
written 12 months ago by B- for bioinformatics 20

Latest awards to B- for bioinformatics

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1812 users visited in the last hour