User: ilovesuperheroes1993

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Posts by ilovesuperheroes1993

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Annotation file of piRNAs
... Hello, I am trying for some time to find the annotation file (gtf / gff3) of all the piRNAs of human (hg19) and mouse (mm10). ( I need hg19 and mm10 versions specifically as all my previous upstream analysis had been done using these versions) I have searched everywhere, but still unable ...
mm10 pirna ncrna gtf / gff3 hg19 written 3 months ago by ilovesuperheroes19930 • updated 3 months ago by genomax67k
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Comment: C: Find the 3' utrs, 5'utrs and their counts from bam files
... Hi, I am currently using hg19 database (Grch37 version). I am unable to find the gtf / gff3 files of the utrs of this version. Could you please link me to them? Thanks a lot ...
written 3 months ago by ilovesuperheroes19930
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Comment: C: Find the 3' utrs, 5'utrs and their counts from bam files
... Thank you. Actually I want to get a gtf file of the utr sequences, and then count the reads using htseq-count. But I am unable to find the gtf files of 3' and 5' utrs. Do you know where I could get it? ...
written 3 months ago by ilovesuperheroes19930
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Find the 3' utrs, 5'utrs and their counts from bam files
... Hello, I have bam files of 8 samples (4 normal and 4 diseased), produced by alignment with novoalign (small-rna sequencing data). I have excluded the mirna from the bam files by using the following command: bedtools intersect -v "sample.bam" "hg19_mirna.gff3" > output.bam In this manner I ...
bedtools bed bam utr ucsc written 3 months ago by ilovesuperheroes19930 • updated 3 months ago by Gautier Richard270

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