User: ilovesuperheroes1993
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Posts by ilovesuperheroes1993
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... Hello,
I am trying for some time to find the annotation file (gtf / gff3) of all the piRNAs of human (hg19) and mouse (mm10).
( I need hg19 and mm10 versions specifically as all my previous upstream analysis had been done using these versions)
I have searched everywhere, but still unable ...
written 3 months ago by
ilovesuperheroes1993 • 0
• updated
3 months ago by
genomax ♦ 67k
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... Hi, I am currently using hg19 database (Grch37 version). I am unable to find the gtf / gff3 files of the utrs of this version. Could you please link me to them? Thanks a lot
...
written 3 months ago by
ilovesuperheroes1993 • 0
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... Thank you. Actually I want to get a gtf file of the utr sequences, and then count the reads using htseq-count. But I am unable to find the gtf files of 3' and 5' utrs. Do you know where I could get it?
...
written 3 months ago by
ilovesuperheroes1993 • 0
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... Hello,
I have bam files of 8 samples (4 normal and 4 diseased), produced by alignment with novoalign (small-rna sequencing data). I have excluded the mirna from the bam files by using the following command:
bedtools intersect -v "sample.bam" "hg19_mirna.gff3" > output.bam
In this manner I ...
written 3 months ago by
ilovesuperheroes1993 • 0
• updated
3 months ago by
Gautier Richard • 270
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