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Showing :
questions
103
votes
34
replies
112k
views
23 follow
How To Split A Bam File By Chromosome
bam
updated 11 weeks ago by
Ram
43k • written 11.8 years ago by
GPR
▴ 390
13
votes
10
replies
40k
views
7 follow
How To Uncompress The 1000 Genome Vcf.Gz File
updated 2.6 years ago by
tcarter.era
• 0 • written 11.4 years ago by
GPR
▴ 390
2
votes
3
replies
7.8k
views
Bwa Mismatches And Seed Length
bwa
updated 5.4 years ago by
Biostar
20 • written 11.4 years ago by
GPR
▴ 390
0
votes
1
reply
2.0k
views
Bedgraph Signal Along Introns
updated 6.9 years ago by
Biostar
20 • written 11.8 years ago by
GPR
▴ 390
0
votes
5
replies
3.8k
views
Tophat2, Strand-Specific And Genes.Gtf
tophat2
updated 7.6 years ago by
Biostar
20 • written 11.2 years ago by
GPR
▴ 390
0
votes
2
replies
1.7k
views
Make Paired File Task-Scripture
updated 8.6 years ago by
Biostar
20 • written 11.5 years ago by
GPR
▴ 390
3
votes
8
replies
3.4k
views
Write Diffgenes/Diffgeneids In A Tab File
cummerbund
updated 13 months ago by
Ram
43k • written 11.7 years ago by
GPR
▴ 390
2
votes
0
replies
2.0k
views
Can Trinity (de novo) be coupled to Tophat?
alignment
Assembly
updated 24 months ago by
Ram
43k • written 9.2 years ago by
GPR
▴ 390
4
votes
5
replies
6.6k
views
Cummerbund
updated 9.9 years ago by
Paul
★ 1.5k • written 11.7 years ago by
GPR
▴ 390
2
votes
3
replies
2.7k
views
Comparative Snp Analysis
varscan
bedtools
intersect
updated 10.1 years ago by
Biostar
20 • written 11.2 years ago by
GPR
▴ 390
13
votes
4
replies
6.4k
views
Extract Alu Repeats
repeats
updated 10.1 years ago by
Kanhu charan Moharana
▴ 10 • written 11.3 years ago by
GPR
▴ 390
0
votes
2
replies
5.7k
views
Microrna Reads Alignment
updated 10.1 years ago by
Charles Warden
8.2k • written 11.3 years ago by
GPR
▴ 390
0
votes
6
replies
5.0k
views
E-Box Promoters In Gene List
motif
enrichment
updated 10.3 years ago by
B. Arman Aksoy
★ 1.2k • written 10.3 years ago by
GPR
▴ 390
0
votes
1
reply
3.5k
views
Strand Specific Tophat Output
updated 10.5 years ago by
Biostar
20 • written 11.0 years ago by
GPR
▴ 390
0
votes
1
reply
3.4k
views
Cuffmerge Error
10.7 years ago by
GPR
▴ 390
1
vote
0
replies
2.2k
views
A-To-G Rna-Editing Vcf File Repository
vcf
11.1 years ago by
GPR
▴ 390
5
votes
2
replies
5.3k
views
Aligning Paired-End Reads In Single-End Mode
paired-end
updated 11.1 years ago by
Farhat
★ 2.9k • written 11.1 years ago by
GPR
▴ 390
1
vote
2
replies
3.9k
views
Gatk-2.3-9 And Input File Format
gatk
bam
updated 11.1 years ago by
vdauwera
★ 1.2k • written 11.1 years ago by
GPR
▴ 390
1
vote
2
replies
9.8k
views
Visualizing Vcf Files With Igv
vcf
igv
updated 11.1 years ago by
samsara
▴ 630 • written 11.1 years ago by
GPR
▴ 390
2
votes
3
replies
9.4k
views
Problems With Chromosome Ordering When Running The Gatk Indelrealigner
gatk
updated 11.1 years ago by
vdauwera
★ 1.2k • written 11.1 years ago by
GPR
▴ 390
0
votes
5
replies
5.4k
views
Varscan2 Strandness Filter
strand
updated 11.2 years ago by
Sean Davis
26k • written 11.2 years ago by
GPR
▴ 390
9
votes
7
replies
2.9k
views
Problems Extracting Non-Snps From A Vcf File
varscan
bedtools
dbsnp
updated 11.2 years ago by
Istvan Albert
100k • written 11.2 years ago by
GPR
▴ 390
1
vote
4
replies
3.1k
views
Appending Gene Ids On Rna-Editing Sites
gene
id
updated 11.2 years ago by
dankoboldt
▴ 140 • written 11.2 years ago by
GPR
▴ 390
4
votes
3
replies
3.2k
views
Varscan Snp Strand Information
varscan
snp
updated 11.2 years ago by
dankoboldt
▴ 140 • written 11.2 years ago by
GPR
▴ 390
0
votes
1
reply
3.2k
views
Varscan Mpileup2Snp Output Missing Varfreq Values
varscan
mpileup
updated 11.2 years ago by
dankoboldt
▴ 140 • written 11.2 years ago by
GPR
▴ 390
2
votes
3
replies
3.7k
views
Gff2Bed.Py Stops
11.2 years ago by
GPR
▴ 390
0
votes
2
replies
3.0k
views
Igvtools Index "Error: For Input String: "Pass""
index
updated 11.2 years ago by
Pierre Lindenbaum
160k • written 11.2 years ago by
GPR
▴ 390
0
votes
2
replies
3.3k
views
Bowtie Sam Output Not Parsed
bowtie
samtools
11.3 years ago by
GPR
▴ 390
2
votes
6
replies
3.9k
views
Blat Input From Vcf File
blat
vcf
updated 11.3 years ago by
Liping
▴ 30 • written 11.3 years ago by
GPR
▴ 390
1
vote
5
replies
5.7k
views
Bowtie Output "Not Enough Fields"
11.3 years ago by
GPR
▴ 390
0
votes
2
replies
1.9k
views
Snps Only In Chromosomes 1-6
varscan
updated 11.3 years ago by
Chris Miller
22k • written 11.3 years ago by
GPR
▴ 390
2
votes
6
replies
2.8k
views
Varscan Output Strandness
snp
strand
updated 11.3 years ago by
Sean Davis
26k • written 11.3 years ago by
GPR
▴ 390
2
votes
5
replies
6.4k
views
Varscan Error On Mpileup Input
varscan
updated 11.3 years ago by
dankoboldt
▴ 140 • written 11.4 years ago by
GPR
▴ 390
1
vote
2
replies
3.5k
views
Bwa Aln 5'-End Soft-Clipping
updated 11.4 years ago by
John St. John
★ 1.2k • written 11.4 years ago by
GPR
▴ 390
1
vote
4
replies
3.0k
views
Mpileup -D And -S
mpileup
vcf
updated 11.4 years ago by
swbarnes2
14k • written 11.4 years ago by
GPR
▴ 390
2
votes
13
replies
5.6k
views
How To Generate A Paired End File Suitable For Bwa
bwa
updated 11.4 years ago by
Ashutosh Pandey
12k • written 11.4 years ago by
GPR
▴ 390
1
vote
2
replies
2.0k
views
Retrieving Gene Names From 3'-End Aligned Reads
bowtie
updated 11.5 years ago by
Damian Kao
16k • written 11.5 years ago by
GPR
▴ 390
2
votes
1
reply
2.7k
views
Mir-Seq Comparative Analysis
updated 11.5 years ago by
VS
▴ 730 • written 11.5 years ago by
GPR
▴ 390
0
votes
2
replies
1.6k
views
Bigbedsummary Output
updated 11.6 years ago by
Istvan Albert
100k • written 11.6 years ago by
GPR
▴ 390
8
votes
6
replies
3.4k
views
Isoform Reconstruction
updated 11.6 years ago by
Qdjm
1.9k • written 11.6 years ago by
GPR
▴ 390
4
votes
2
replies
5.0k
views
Class_Code In Isoform-Fpkm-Tracking
cuffdiff
updated 11.6 years ago by
Sukhi Singh
11k • written 11.6 years ago by
GPR
▴ 390
0
votes
2
replies
3.1k
views
Cuffdiff Very High/Low Ratios, Still Significant
cuffdiff
11.6 years ago by
GPR
▴ 390
0
votes
2
replies
2.1k
views
Scripture And Transcript Abundance
transcript
11.7 years ago by
GPR
▴ 390
0
votes
0
replies
2.0k
views
Paire-End Alignments And Scripture
paired-end
11.7 years ago by
GPR
▴ 390
0
votes
2
replies
1.4k
views
Bigbedsummary Usage
11.7 years ago by
GPR
▴ 390
2
votes
2
replies
1.6k
views
Scripture: One Chromosome At A Time?
11.7 years ago by
GPR
▴ 390
5
votes
3
replies
3.6k
views
Samtools Call Snps
snp
11.8 years ago by
GPR
▴ 390
2
votes
2
replies
6.6k
views
Samtools Sort
deleted-post
11.8 years ago by
GPR
▴ 390
1
vote
0
replies
2.0k
views
Defining Sart And End Boundaries In A Cufflinks Assembled Transcript
transcript
assembly
11.8 years ago by
GPR
▴ 390
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