User: Shina

gravatar for Shina
Shina10
Reputation:
10
Status:
New User
Location:
Hannover Germany
Last seen:
1 month, 3 weeks ago
Joined:
7 months, 2 weeks ago
Email:
B********@gmail.com

Posts by Shina

<prev • 9 results • page 1 of 1 • next >
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Comment: C: Volcano_plot using R
... Is there any way to put the names of the Genes having high fold change values with connectors.? using Calibrate library. library(calibrate) here is my code with(subset(res, pvalue<.05 & abs(log2FoldChanges)>1.6), textxy(log2FoldChanges, -log10(pvalue), labs=Gene, cex=.6)) ...
written 7 months ago by Shina10
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Comment: C: Volcano_plot using R
... thanks for the code I try it but it always gives this error Error in geom_text_repel(show.legend = FALSE) : could not find function "geom_text_repel" ...
written 7 months ago by Shina10
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Comment: C: Volcano_plot using R
... Thanks how can i add the names of the significant genes in a more good way and avoid the overlapping and also put the connector. ...
written 7 months ago by Shina10
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Comment: C: Volcano_plot using R
... Its not possible to download on my lab PC i will try it on my laptop hopefully it will work thanks for your help stay bless! ...
written 7 months ago by Shina10
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Comment: C: Volcano_plot using R
... i uesed GeneXplain to identify DEGs their they only have p value and fold change calculation and they calculate the FDR for the whole number of Genes rather then for indivisuals so thats why i used the pvalue calculations rather then FDR, the problem with the plot is that their are no genes near to ...
written 7 months ago by Shina10
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Comment: C: Volcano_plot using R
... That is also a mistake thanks for pointing out . ...
written 7 months ago by Shina10
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Comment: C: Volcano_plot using R
... Thanks for your suggestion i will do that. ...
written 7 months ago by Shina10
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Comment: C: Volcano_plot using R
... **I tried but always get this error message** > devtools::install_github('kevinblighe/EnhancedVolcano') > Error in curl::curl_fetch_memory(url, handle = h) : > Failed to connect to api.github.com port 443: Timed out ...
written 7 months ago by Shina10
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Volcano_plot using R
... using the following R Script i want to generate Volcano plot.but my volcano plot is not correct because their is no connecting point between -logpvalue and log2foldchange value if i run the example as provided on web i get the corrected one its mean the script is correct but something is wrong in my ...
R degs volcanoplot written 7 months ago by Shina10 • updated 7 months ago by RamRS24k

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